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scnpilot_solids1_trim150_scaffold_1302_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1302_curated_1
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..712
DNA (711bp) protein (237aa)
Flagellar biosynthesis protein FlhB n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UMV8_PSEUP
Flagellar biosynthesis protein FlhB {ECO:0000313|EMBL:KGM57345.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
flhB; flagellar biosynthesis protein FlhB; K02401 flagellar biosynthetic protein FlhB
scnpilot_solids1_trim150_scaffold_1302_curated_2
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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709..2799
DNA (2091bp) protein (697aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UMV7_PSEUP
flhA; flagellar biosynthesis protein FlhA; K02400 flagellar biosynthesis protein FlhA
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1302_curated_3
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2838..4409
DNA (1572bp) protein (524aa)
Flagellar biosynthesis regulator FlhF n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWF4_PSEUP
flagellar biosynthesis regulator FlhF; K02404 flagellar biosynthesis protein FlhF
Flagellar biosynthesis regulator FlhF {ECO:0000313|EMBL:AER55267.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
scnpilot_solids1_trim150_scaffold_1302_curated_4
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4396..5253
DNA (858bp) protein (286aa)
Site-determining protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWF3_PSEUP
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
cobyrinic acid ac-diamide synthase; K04562 flagellar biosynthesis protein FlhG
scnpilot_solids1_trim150_scaffold_1302_curated_5
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5250..6002
DNA (753bp) protein (251aa)
RNA polymerase sigma factor FliA n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWF2_PSEUP
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
RNA polymerase sigma-28 subunit FliA/WhiG; K02405 RNA polymerase sigma factor for flagellar operon FliA
scnpilot_solids1_trim150_scaffold_1302_curated_6
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6101..6493
DNA (393bp) protein (131aa)
Chemotaxis protein CheY n=1 Tax=Shewanella benthica KT99 RepID=A9DA03_9GAMM
Histidine kinase {ECO:0000313|EMBL:KGO98282.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
response regulator receiver protein; K03413 two-component system, chemotaxis family, response regulator CheY
scnpilot_solids1_trim150_scaffold_1302_curated_7
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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6490..7107
DNA (618bp) protein (206aa)
Protein phosphatase CheZ n=2 Tax=Xanthomonas campestris pv. translucens RepID=L0SS03_XANCT
cheZ; chemotaxis phosphatase chez protein; K03414 chemotaxis protein CheZ
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1302_curated_8
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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7110..8879
DNA (1770bp) protein (590aa)
chemotaxis protein CheA; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
CheA signal transduction histidine kinase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WT95_PSEUU
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1302_curated_9
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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8889..9629
DNA (741bp) protein (247aa)
flagellar motor protein n=1 Tax=Xanthomonas RepID=UPI000262B3F9
motC; flagellar motor protein; K02556 chemotaxis protein MotA
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1302_curated_10
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9641..10552
DNA (912bp) protein (304aa)
Flagellar motor protein MotD n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWF0_PSEUP
Flagellar motor protein MotD {ECO:0000313|EMBL:KGM57336.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
flagellar motor protein MotD; K02557 chemotaxis protein MotB
scnpilot_solids1_trim150_scaffold_1302_curated_11
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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10552..11316
DNA (765bp) protein (255aa)
Chromosome partitioning protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWE9_PSEUP
chromosome partitioning protein; K03496 chromosome partitioning protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1302_curated_12
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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11313..12260
DNA (948bp) protein (316aa)
Chemotaxis signal transduction protein n=1 Tax=Xanthomonas citri subsp. citri Aw12879 RepID=M4VZB4_XANCI
cheW; Chemotaxis signal transduction protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1302_curated_13
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12371..12655
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002EBF050
Uncharacterized protein {ECO:0000313|EMBL:KGM57334.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1302_curated_14
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12691..13017
DNA (327bp) protein (109aa)
Chemotaxis response regulator n=24 Tax=Xanthomonas RepID=B0RSU1_XANCB
Fis family transcriptional regulator {ECO:0000313|EMBL:KGM57333.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
response regulator receiver protein; K03413 two-component system, chemotaxis family, response regulator CheY
scnpilot_solids1_trim150_scaffold_1302_curated_15
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13035..14270
DNA (1236bp) protein (412aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
cheA; signal transduction histidine kinase (EC:2.7.3.-); K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
Chemotaxis protein n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KJP4_STEMA
scnpilot_solids1_trim150_scaffold_1302_curated_16
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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14267..15082
DNA (816bp) protein (272aa)
cheA; chemotaxis protein; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
chemotaxis protein CheA, partial n=3 Tax=Xanthomonas RepID=UPI0003747748
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1302_curated_17

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comp(15128..15448)
DNA (321bp) protein (107aa)
membrane protein n=1 Tax=Xanthomonas sacchari RepID=UPI000262ACC3
Uncharacterized protein {ECO:0000313|EMBL:KKO11808.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1302_curated_18
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15768..18359)
DNA (2592bp) protein (864aa)
Aconitate hydratase B {ECO:0000256|PIRNR:PIRNR036687}; EC=4.2.1.3 {ECO:0000256|PIRNR:PIRNR036687};; EC=4.2.1.99 {ECO:0000256|PIRNR:PIRNR036687};; 2-methylisocitrate dehydratase {ECO:0000256|PIRNR:PIRNR036687}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
aconitate hydratase 2; K01682 aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
Aconitate hydratase 2 n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TLX8_STEMA
scnpilot_solids1_trim150_scaffold_1302_curated_19
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18400..18564)
DNA (165bp) protein (55aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UN38_PSEUP
NODE_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96579.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
hypothetical protein; K07062
Displaying 19 items

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