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scnpilot_solids2_trim150_scaffold_1010_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1010_curated_1
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

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1..135
DNA (135bp) protein (45aa)
NLP/P60 protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X8N4_NAKMY
NLP/P60 protein
NLP/P60 protein {ECO:0000313|EMBL:ACV79089.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_1010_curated_2
unknown

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320..589
DNA (270bp) protein (90aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1010_curated_3
Intrasporangium calvum, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

750..1253
DNA (504bp) protein (168aa)
Putative uncharacterized protein n=1 Tax=Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) RepID=E6S7G9_INTC7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU46864.1}; TaxID=710696 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 /; NBRC 12989 / 7 KIP).;"
scnpilot_solids2_trim150_scaffold_1010_curated_4
Streptomyces auratus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1250..1966)
DNA (717bp) protein (239aa)
ABC transporter n=1 Tax=Nocardiopsis halophila RepID=UPI00034915E8
ABC transporter-like protein {ECO:0000313|EMBL:EJJ08314.1}; TaxID=1160718 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces auratus AGR0001.;"
ABC transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_1010_curated_5
Streptomyces sp. 769, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2021..3067)
DNA (1047bp) protein (349aa)
ABC transporter substrate-binding protein n=1 Tax=Streptomyces sp. MspMP-M5 RepID=UPI000361A83B
ABC transport system transmembrane protein {ECO:0000313|EMBL:AJC55350.1}; TaxID=1262452 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 769.;"
hypothetical protein; K02004 putative ABC transport system permease protein
scnpilot_solids2_trim150_scaffold_1010_curated_6
Streptomyces natalensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3385..4608
DNA (1224bp) protein (408aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1240678 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces natalensis ATCC 27448.;"
histidine kinase n=1 Tax=Streptomyces sp. MspMP-M5 RepID=UPI00035DFEE5
integral membrane sensor signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_1010_curated_7
Streptomyces sp. 769, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4605..5252
DNA (648bp) protein (216aa)
LuxR family transcriptional regulator n=1 Tax=Streptomyces sp. MspMP-M5 RepID=UPI000379FD3F
Two component transcriptional regulator C LuxR family {ECO:0000313|EMBL:AJC55348.1}; TaxID=1262452 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 769.;"
Hemoglobin-dependent two component system response regulator HrrA
scnpilot_solids2_trim150_scaffold_1010_curated_8
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5155..5955)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0E4M0_9MICO
Uncharacterized protein {ECO:0000313|EMBL:CCH79351.1}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
HNH nuclease
scnpilot_solids2_trim150_scaffold_1010_curated_9
Actinoplanes sp. SE50/110, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6933..7715
DNA (783bp) protein (261aa)
spermidine/putrescine import ATP-binding protein potA (EC:3.6.3.31)
Spermidine/putrescine import ATP-binding protein potA {ECO:0000313|EMBL:AEV86349.1}; EC=3.6.3.31 {ECO:0000313|EMBL:AEV86349.1};; TaxID=134676 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110).;"
Spermidine/putrescine import ATP-binding protein potA n=1 Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8S7B8_ACTS5
scnpilot_solids2_trim150_scaffold_1010_curated_10
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7712..8449
DNA (738bp) protein (246aa)
ABC-2 type transporter n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X7C3_NAKMY
ABC transporter
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_1010_curated_11
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8466..9185
DNA (720bp) protein (240aa)
Transcriptional regulator, TetR family n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0L8Q5_9ACTO
Transcriptional regulator, TetR family {ECO:0000313|EMBL:CCH20202.1}; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
TetR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_1010_curated_12
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9217..10569
DNA (1353bp) protein (451aa)
Major facilitator superfamily MFS_1 n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X7C0_NAKMY
major facilitator superfamily protein; K06902 MFS transporter, UMF1 family
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACV76989.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_1010_curated_13
unknown

Not on your lists

10772..10924
DNA (153bp) protein (51aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1010_curated_14
Mycobacterium aromaticivorans, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10996..11451
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Mycobacterium sp. 141 RepID=UPI00035E765E
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1440774 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium aromaticivorans JS19b1 = JCM 16368.;"
Integral membrane protein possibly involved in chromosome condensation
scnpilot_solids2_trim150_scaffold_1010_curated_15
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11480..11845
DNA (366bp) protein (122aa)
Putative fluoride ion transporter CrcB n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XKP1_NAKMY
camphor resistance protein CrcB; K06199 CrcB protein
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_1010_curated_16
Mycobacterium xenopi, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11976..13064)
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Mycobacterium sp. 155 RepID=UPI000373830F
Uncharacterized protein {ECO:0000313|EMBL:EID16726.1}; TaxID=1150591 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium xenopi RIVM700367.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1010_curated_17
Nocardia brasiliensis, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13218..14723
DNA (1506bp) protein (502aa)
Uncharacterized protein n=1 Tax=Bordetella petrii RepID=I1SZ79_9BORD
Uncharacterized protein {ECO:0000313|EMBL:GAJ82132.1}; TaxID=1206724 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia brasiliensis NBRC 14402.;"
scnpilot_solids2_trim150_scaffold_1010_curated_18
Nocardia brasiliensis, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14669..15553
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6JJ70_STRRC
Uncharacterized protein {ECO:0000313|EMBL:GAJ82131.1}; TaxID=1206724 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia brasiliensis NBRC 14402.;"
scnpilot_solids2_trim150_scaffold_1010_curated_19
unknown

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15777..16460
DNA (684bp) protein (228aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1010_curated_20
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16945..18459
DNA (1515bp) protein (505aa)
peptidase S1 and S6 chymotrypsin/Hap; K01362 [EC:3.4.21.-]
septum formation initiator n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B481F8
Peptidase S1 and S6 chymotrypsin/Hap {ECO:0000313|EMBL:CCH79974.1}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
scnpilot_solids2_trim150_scaffold_1010_curated_21
Mycobacterium chubuense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18536..19213)
DNA (678bp) protein (226aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Mycobacterium chubuense (strain NBB4) RepID=I4BDR5_MYCCN
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AFM15422.1}; TaxID=710421 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium chubuense (strain NBB4).;"
scnpilot_solids2_trim150_scaffold_1010_curated_22
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19210..20262)
DNA (1053bp) protein (351aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
histidine kinase; K07768 two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
histidine kinase n=1 Tax=Amycolatopsis methanolica RepID=UPI000377DDC2
scnpilot_solids2_trim150_scaffold_1010_curated_23
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20503..20949)
DNA (447bp) protein (149aa)
phosphate ABC transporter ATPase; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27]
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
Phosphate ABC transporter, ATPase subunit n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XA51_NAKMY
scnpilot_solids2_trim150_scaffold_1010_curated_24
unknown

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21196..21306
DNA (111bp) protein (37aa)

This feature has no annotations

Displaying 24 items

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