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scnpilot_solids2_trim150_scaffold_366_curated

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_366_curated_1
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(395..1462)
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Streptomyces canus RepID=UPI0003788395
ABC transporter; K10440 ribose transport system permease protein
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEH10656.1}; TaxID=656024 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
scnpilot_solids2_trim150_scaffold_366_curated_2
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1459..3024)
DNA (1566bp) protein (522aa)
ABC transporter; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
hypothetical protein n=1 Tax=Streptomyces canus RepID=UPI0003628FCB
ABC transporter related protein {ECO:0000313|EMBL:EFC81430.1}; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
scnpilot_solids2_trim150_scaffold_366_curated_3
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3032..4270)
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Streptomyces canus RepID=UPI00036EC532
sugar ABC transporter periplasmic protein; K10439 ribose transport system substrate-binding protein
ABC-type sugar transport system periplasmic component-like protein {ECO:0000313|EMBL:AEH10654.1}; Flags: Precursor;; TaxID=656024 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
scnpilot_solids2_trim150_scaffold_366_curated_4
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(4398..4835)
DNA (438bp) protein (146aa)
Phenazine biosynthesis protein A/B n=1 Tax=Streptomyces chartreusis RepID=UPI000262F769
Uncharacterized protein {ECO:0000313|EMBL:KIJ79624.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_366_curated_5
unknown

Not on your lists

comp(4855..5247)
DNA (393bp) protein (131aa)
Putative uncharacterized protein n=1 Tax=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) RepID=A1TCZ4_MYCVP
hypothetical protein
scnpilot_solids2_trim150_scaffold_366_curated_6
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5247..6755)
DNA (1509bp) protein (503aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
aldehyde dehydrogenase n=1 Tax=Salinispora pacifica RepID=UPI0003712E28
Aldehyde dehydrogenase {ECO:0000313|EMBL:ABV98637.1}; TaxID=391037 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
scnpilot_solids2_trim150_scaffold_366_curated_7
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6843..7664)
DNA (822bp) protein (274aa)
IclR family transcriptional regulator n=1 Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2L7E4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ETR79114.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
IclR family transcriptional regulator; K13641 IclR family transcriptional regulator, acetate operon repressor
scnpilot_solids2_trim150_scaffold_366_curated_8
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7664..8509)
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Nonomuraea coxensis RepID=UPI00037CA4E8
Uncharacterized protein {ECO:0000313|EMBL:ETR79115.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
IclR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_366_curated_9
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8566..9564)
DNA (999bp) protein (333aa)
NAD(P)H quinone oxidoreductase n=1 Tax=Alcanivorax sp. PN-3 RepID=U7HZ81_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ETX00172.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
NAD(P)H quinone oxidoreductase
scnpilot_solids2_trim150_scaffold_366_curated_10
Streptomyces mobaraensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9573..11129)
DNA (1557bp) protein (519aa)
glucose-methanol-choline oxidoreductase; K00108 choline dehydrogenase [EC:1.1.99.1]
Glucose-methanol-choline oxidoreductase n=1 Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3C133_STRMB
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:EME97666.1}; TaxID=1223523 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mobaraensis NBRC 13819 = DSM 40847.;"
scnpilot_solids2_trim150_scaffold_366_curated_11
Nocardiopsis dassonvillei, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11126..11917)
DNA (792bp) protein (264aa)
3-ketoacyl-ACP reductase n=1 Tax=Nocardiopsis synnemataformans RepID=UPI0003488889
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADH68328.1}; TaxID=446468 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 /; JCM 7437 / NCTC 10488) (Actinomadura dassonvillei).;"
scnpilot_solids2_trim150_scaffold_366_curated_12
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(11914..13146)
DNA (1233bp) protein (411aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ADB48741.1}; EC=2.3.1.9 {ECO:0000313|EMBL:ADB48741.1};; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Acetyl-CoA acetyltransferase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F668_CONWI
scnpilot_solids2_trim150_scaffold_366_curated_13
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

13194..14441
DNA (1248bp) protein (416aa)
riBBA; riboflavin biosynthesis protein ribBA; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
Riboflavin biosynthesis protein RibBA n=1 Tax=uncultured bacterium A1Q1_fos_862 RepID=L7VZM5_9BACT
Tax=RBG_16_Actinobacteria_70_17_curated
scnpilot_solids2_trim150_scaffold_366_curated_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14438..15439
DNA (1002bp) protein (334aa)
phosphotriesterase n=1 Tax=Mycobacterium hassiacum RepID=UPI00037E99FA
putative metal-dependent hydrolase with the TIM-barrel fold; K07048 phosphotriesterase-related protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
scnpilot_solids2_trim150_scaffold_366_curated_15
unknown

Not on your lists

15451..15753
DNA (303bp) protein (101aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_366_curated_16
Rhodococcus imtechensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15753..16232
DNA (480bp) protein (160aa)
NADH-dependent flavin oxidoreductase; K14631 flavin reductase ActVB [EC:1.5.1.-]
NADH-dependent flavin oxidoreductase n=1 Tax=Rhodococcus imtechensis RKJ300 = JCM 13270 RepID=I0WKT4_9NOCA
NADH-dependent flavin oxidoreductase {ECO:0000313|EMBL:EID77000.1}; TaxID=1165867 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus imtechensis RKJ300 = JCM 13270.;"
scnpilot_solids2_trim150_scaffold_366_curated_17
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16232..17767
DNA (1536bp) protein (512aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:CCH79439.1}; EC=6.2.1.3 {ECO:0000313|EMBL:CCH79439.1};; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
AMP-dependent synthetase and ligase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F9N2_CONWI
scnpilot_solids2_trim150_scaffold_366_curated_18
RBG_13_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

Not on your lists

17771..18337
DNA (567bp) protein (189aa)
Carboxymuconolactone decarboxylase family protein 1 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HUE9_ACHXA
hypothetical protein
Tax=RBG_13_Chloroflexi_50_10_curated
scnpilot_solids2_trim150_scaffold_366_curated_19
Methanofollis liminatans, Methanofollis, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

18344..18724
DNA (381bp) protein (127aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Methanofollis liminatans DSM 4140 RepID=J1L6F4_9EURY
hypothetical protein
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:EJG08385.1}; TaxID=28892 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanofollis.;" source="Methanofollis liminatans DSM 4140.;"
scnpilot_solids2_trim150_scaffold_366_curated_20
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

18728..19867
DNA (1140bp) protein (380aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Patulibacter medicamentivorans RepID=H0EBJ4_9ACTN
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:EHN08941.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
acyl-CoA dehydrogenase
scnpilot_solids2_trim150_scaffold_366_curated_21
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

19878..20834
DNA (957bp) protein (319aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Patulibacter medicamentivorans RepID=H0EBJ5_9ACTN
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:EHN08942.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
acyl-CoA dehydrogenase
scnpilot_solids2_trim150_scaffold_366_curated_22
Nocardia brasiliensis, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20847..21458)
DNA (612bp) protein (204aa)
Carboxymuconolactone decarboxylase family protein n=1 Tax=Polaromonas sp. CF318 RepID=J2TYR0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:GAJ80927.1}; TaxID=1206724 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia brasiliensis NBRC 14402.;"
carboxymuconolactone decarboxylase
scnpilot_solids2_trim150_scaffold_366_curated_23
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21477..22550)
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3IVA9_FRASU
hypothetical protein; K10439 ribose transport system substrate-binding protein
Uncharacterized protein {ECO:0000313|EMBL:ADP81273.1}; Flags: Precursor;; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
scnpilot_solids2_trim150_scaffold_366_curated_24
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22574..23581)
DNA (1008bp) protein (336aa)
Inner-membrane translocator n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3IVB2_FRASU
inner-membrane translocator; K10440 ribose transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ADP81276.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
scnpilot_solids2_trim150_scaffold_366_curated_25
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23568..25157)
DNA (1590bp) protein (530aa)
ABC transporter related protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3IVB1_FRASU
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADP81275.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
scnpilot_solids2_trim150_scaffold_366_curated_26
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25230..25730)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CM06_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA22493.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
scnpilot_solids2_trim150_scaffold_366_curated_27
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25768..26871)
DNA (1104bp) protein (368aa)
zinc-binding alcohol dehydrogenase; K00055 aryl-alcohol dehydrogenase [EC:1.1.1.90]
Alcohol dehydrogenase, zinc-binding protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AV61_RUBXD
Alcohol dehydrogenase, zinc-binding protein {ECO:0000313|EMBL:ABG04717.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
scnpilot_solids2_trim150_scaffold_366_curated_28
unknown

Not on your lists

27170..27985
DNA (816bp) protein (272aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_366_curated_29
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28353..29207)
DNA (855bp) protein (285aa)
short chain dehydrogenase (EC:1.1.1.-)
Short chain dehydrogenase n=2 Tax=Rhodococcus RepID=K8XMI5_RHOOP
Short chain dehydrogenase {ECO:0000313|EMBL:EKT82619.1}; TaxID=1129896 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus M213.;"
scnpilot_solids2_trim150_scaffold_366_curated_30
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29189..29773)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Saccharomonospora marina XMU15 RepID=H5WXK4_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:EHR50607.1}; TaxID=882083 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
carboxymuconolactone decarboxylase
Displaying items 1-30 of 40 in total

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