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scnpilot_solids2_trim150_scaffold_2359_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2359_curated_1
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(289..627)
DNA (339bp) protein (113aa)
Ethyl tert-butyl ether degradation EthD n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CQL3_PSEUX
ethyl tert-butyl ether degradation EthD
Ethyl tert-butyl ether degradation EthD {ECO:0000313|EMBL:AEA22805.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
scnpilot_solids2_trim150_scaffold_2359_curated_2
unknown

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814..996
DNA (183bp) protein (61aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2359_curated_3
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1063..2163)
DNA (1101bp) protein (367aa)
Histone deacetylase n=1 Tax=Sporosarcina newyorkensis 2681 RepID=F9DRX4_9BACL
Acetoin utilization protein {ECO:0000313|EMBL:KJC62215.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
histone deacetylase superfamily protein
scnpilot_solids2_trim150_scaffold_2359_curated_4
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(2183..3325)
DNA (1143bp) protein (381aa)
long-chain-acyl-CoA dehydrogenase (EC:1.3.99.13); K00255 long-chain-acyl-CoA dehydrogenase [EC:1.3.99.13]
Long-chain-acyl-CoA dehydrogenase n=2 Tax=Rhodococcus RepID=Q0SE85_RHOSR
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:GAF44872.1}; TaxID=1219028 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis NBRC 100605.;"
scnpilot_solids2_trim150_scaffold_2359_curated_5
Saccharomonospora azurea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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3397..4074
DNA (678bp) protein (226aa)
Fructose-2,6-bisphosphatase n=1 Tax=Saccharomonospora azurea NA-128 RepID=H8GF15_9PSEU
Fructose-2,6-bisphosphatase {ECO:0000313|EMBL:EHY91046.1}; TaxID=882081 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora azurea NA-128.;"
fructose-2,6-bisphosphatase
scnpilot_solids2_trim150_scaffold_2359_curated_6
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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4557..5033
DNA (477bp) protein (159aa)
Cupin 2, conserved barrel n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AYL6_RUBXD
cupin 2 barrel domain-containing protein
Cupin 2, conserved barrel {ECO:0000313|EMBL:ABG03512.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
scnpilot_solids2_trim150_scaffold_2359_curated_7
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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5048..6655
DNA (1608bp) protein (536aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
AMP-dependent synthetase and ligase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SI97_THEM7
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADU51908.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
scnpilot_solids2_trim150_scaffold_2359_curated_8
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

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comp(6639..7115)
DNA (477bp) protein (159aa)
UPI0003CE7F2F related cluster n=1 Tax=unknown RepID=UPI0003CE7F2F
Tax=RBG_16_RIF_CHLX_72_14_curated
scnpilot_solids2_trim150_scaffold_2359_curated_9
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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7294..7623
DNA (330bp) protein (110aa)
Ethyl tert-butyl ether degradation EthD n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CQL3_PSEUX
ethyl tert-butyl ether degradation EthD
Ethyl tert-butyl ether degradation EthD {ECO:0000313|EMBL:AEA22805.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
scnpilot_solids2_trim150_scaffold_2359_curated_10
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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7690..9159
DNA (1470bp) protein (490aa)
pyruvate carboxylase; K01571 oxaloacetate decarboxylase, alpha subunit [EC:4.1.1.3]
2-oxoglutarate carboxylase large subunit {ECO:0000313|EMBL:KJF18661.1}; EC=6.4.1.7 {ECO:0000313|EMBL:KJF18661.1};; TaxID=1280514 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
carboxyltransferase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEE9F
scnpilot_solids2_trim150_scaffold_2359_curated_11
Gordonia terrae, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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9162..9812
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2NEY5_9ACTO
Putative oxidoreductase {ECO:0000313|EMBL:GAB42010.1}; TaxID=1089454 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia terrae NBRC 100016.;"
Nitroreductase
Displaying 11 items

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