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scnpilot_solids2_trim150_scaffold_2105_curated_8

Organism: solids_Actinobacteria_3

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 ASCG 9 / 38
Location: comp(4309..5187)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Streptomyces violaceusniger Tu 4113 RepID=G2NTM2_STRVO similarity UNIREF
DB: UNIREF100
  • Identity: 66.9
  • Coverage: 296.0
  • Bit_score: 372
  • Evalue 3.60e-100
RNA polymerase sigma 70 {ECO:0000313|EMBL:KKA41445.1}; TaxID=1354891 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. MUSC164.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 66.2
  • Coverage: 296.0
  • Bit_score: 377
  • Evalue 1.60e-101
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 66.9
  • Coverage: 296.0
  • Bit_score: 372
  • Evalue 1.10e-100

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Taxonomy

Streptomyces sp. MUSC164 → Streptomyces → Streptomycetales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 879
ATGACTGAAGGCGACCTGATCGTCAGCGCATTCGAGGAGCAGCGGCCGCACCTGCGGGCGGTGGCCTACCGCATGCTGGGCTCGACCGGCGAGGCGGACGACGCGGTGCAGGAGGCCTGGCTGCGACTGAGCCGCAGCGACGCCGAGGAGATCGAGAACCTCGGCGGCTGGCTGACCACGGTGGTGGCGCGGATCTGCCTGAACATGCTGCGCTCGCGCAACTCGCGCCGCGAGCAGCCGCTCGACGCCCGCATGCCGGACCCCATCGTCGACCCGATCGACGGCACCGACCCCGAGCACGAGGCGCTGCTCGCCGACTCGGTCGGCATCGCGATGCTGATGGTGCTGGAAACGCTGAGCCCGGCGGAGCGGCTCGCCTTCGTCCTGCACGACATGTTCGGCGTGCCCTTCGACGAGATCGCGCCGATCGTCGACCGCACGCCGGACGCGGCGCGCCAGCTCGCCAGCCGCGGCCGCCGCCGCCTGCAGGCCGCCGACCCGGTCCCCGAGCCCGATCTCGACGCCCAGCGCGAGGTCGTCGCCGCCTTCATCGCCGCCGCCCGCCAGGGCGACTTCGAGCGGCTGGTCAGCGTCCTCCACCCCGACGTCGTGCTGCGCGCCGACTTCGGCCCGGACCGCGAGCCCCAGGAGGTGCGTGGCGCCGAGGCGGTCATCGCCCAGGCCAGCACCTTTGCCCGCCTCGGCCTCAAAGGCCGCATGGTCCGGGTCAACGGCGCGATCGGCACCGTCGCGCTGCGCGACGGCGAGCTCTTCTCGGTCGGCGCGGTCAAGGTCCGCGAGGGCCGGATCGTCGAGATCGACTTCCTCGCCGACCCGGCCCGCCTGGCGGCGCTCGACGTCAGCTGGCTCGACGCCTAA
PROTEIN sequence
Length: 293
MTEGDLIVSAFEEQRPHLRAVAYRMLGSTGEADDAVQEAWLRLSRSDAEEIENLGGWLTTVVARICLNMLRSRNSRREQPLDARMPDPIVDPIDGTDPEHEALLADSVGIAMLMVLETLSPAERLAFVLHDMFGVPFDEIAPIVDRTPDAARQLASRGRRRLQAADPVPEPDLDAQREVVAAFIAAARQGDFERLVSVLHPDVVLRADFGPDREPQEVRGAEAVIAQASTFARLGLKGRMVRVNGAIGTVALRDGELFSVGAVKVREGRIVEIDFLADPARLAALDVSWLDA*