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scnpilot_solids2_trim150_scaffold_1091_curated

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1091_curated_1
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..122
DNA (120bp) protein (40aa)
nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) (EC:2.4.2.19); K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
Nicotinate-nucleotide pyrophosphorylase (Carboxylating) {ECO:0000313|EMBL:BAI76116.1}; EC=2.4.2.19 {ECO:0000313|EMBL:BAI76116.1};; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
Nicotinate-nucleotide pyrophosphorylase (Carboxylating) n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P637_AZOS1
scnpilot_solids2_trim150_scaffold_1091_curated_2
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

174..944
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QCG5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EIG57471.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
oxidoreductase
scnpilot_solids2_trim150_scaffold_1091_curated_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

983..1807
DNA (825bp) protein (275aa)
PREDICTED: 3-hydroxybutyrate dehydrogenase type 2-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C15775
short chain dehydrogenase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABS62354.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_1091_curated_4
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1856..2503)
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Woodsholea maritima RepID=UPI000361220A
Cell wall hydrolase SleB {ECO:0000313|EMBL:GAK45066.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1091_curated_5
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2694..5369)
DNA (2676bp) protein (892aa)
ppdK; pyruvate phosphate dikinase; K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1]
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI0003605712
Pyruvate phosphate dikinase {ECO:0000313|EMBL:GAK45065.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
scnpilot_solids2_trim150_scaffold_1091_curated_6
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5521..5805
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003817AEB
Membrane protein {ECO:0000313|EMBL:KGM31152.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1091_curated_7
Leptospira sp. B5-022, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

5938..6330
DNA (393bp) protein (131aa)
MAPEG family protein n=1 Tax=Leptospira sp. B5-022 RepID=M6D9P7_9LEPT
MAPEG family protein {ECO:0000313|EMBL:EMK00893.1}; TaxID=1242992 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira sp. B5-022.;"
membrane-associated protein in eicosanoid and glutathione metabolism (mapeg)
scnpilot_solids2_trim150_scaffold_1091_curated_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6502..8658)
DNA (2157bp) protein (719aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
glyS; glycyl-tRNA synthetase subunit beta (EC:6.1.1.14); K01879 glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
Glycyl-tRNA synthetase, tetrameric type, beta subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQ40_9RHIZ
scnpilot_solids2_trim150_scaffold_1091_curated_9
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8658..9539)
DNA (882bp) protein (294aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
glyQ; glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14); K01878 glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
Glycine--tRNA ligase alpha subunit n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HFK1_9PROT
scnpilot_solids2_trim150_scaffold_1091_curated_10
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9647..10417)
DNA (771bp) protein (257aa)
Uncharacterized protein n=2 Tax=Methylobacterium RepID=B1ZCH0_METPB
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EHP94606.1}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
scnpilot_solids2_trim150_scaffold_1091_curated_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10434..11162)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPJ7_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61850.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_1091_curated_12
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11240..11959)
DNA (720bp) protein (240aa)
O-methyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HR14_PARL1
O-methyltransferase
O-methyltransferase {ECO:0000313|EMBL:ABS62347.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_1091_curated_13
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11956..12162)
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036B24B3
Uncharacterized protein {ECO:0000313|EMBL:GAN76542.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1091_curated_14
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12264..13280
DNA (1017bp) protein (339aa)
hypothetical protein; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90]
Geranylgeranyl pyrophosphate synthase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JPA2_9PROT
Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:EKE72289.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
scnpilot_solids2_trim150_scaffold_1091_curated_15
unknown

Not on your lists

comp(13514..14386)
DNA (873bp) protein (291aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1091_curated_16
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14450..15370)
DNA (921bp) protein (307aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E10C3B
scnpilot_solids2_trim150_scaffold_1091_curated_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15321..17021)
DNA (1701bp) protein (567aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PP11_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41230.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1091_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17033..18697)
DNA (1665bp) protein (555aa)
electron-transferring-flavoprotein dehydrogenase; K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
Electron-transferring-flavoprotein dehydrogenase {ECO:0000313|EMBL:ABS62342.1}; EC=1.5.5.1 {ECO:0000313|EMBL:ABS62342.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Electron-transferring-flavoprotein dehydrogenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HR09_PARL1
scnpilot_solids2_trim150_scaffold_1091_curated_19
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18842..19729
DNA (888bp) protein (296aa)
phage SPO1 DNA polymerase-like protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
Phage SPO1 DNA polymerase-related protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HR08_PARL1
Phage SPO1 DNA polymerase-related protein {ECO:0000313|EMBL:ABS62341.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_1091_curated_20
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19962..20345
DNA (384bp) protein (128aa)
Molybdenum cofactor biosynthesis protein B n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JUP0_HYPDA
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
molybdenum cofactor biosynthesis protein B; K03638 molybdenum cofactor biosynthesis protein B
scnpilot_solids2_trim150_scaffold_1091_curated_21
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20389..21576)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y978_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB74693.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
scnpilot_solids2_trim150_scaffold_1091_curated_22
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

21806..22939
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. 217 RepID=A3W746_9RHOB
BNR/Asp-box repeat-containing protein
Tax=RBG_16_Actinobacteria_67_10_curated
scnpilot_solids2_trim150_scaffold_1091_curated_23
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

22936..23211
DNA (276bp) protein (92aa)
UBA/THIF-type NAD/FAD binding protein id=14626398 bin=bin7_NC10_sister species=Actinopolymorpha alba genus=Actinopolymorpha taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
sulfur carrier protein ThiS
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
scnpilot_solids2_trim150_scaffold_1091_curated_24
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23420..24517
DNA (1098bp) protein (366aa)
Blr2519 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89S86_BRADU
Uncharacterized protein {ECO:0000313|EMBL:EJZ28939.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1091_curated_25
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24560..24955
DNA (396bp) protein (132aa)
Germin subfamily 1 member 15 n=1 Tax=Burkholderia sp. JPY251 RepID=UPI00036662BA
hypothetical protein
AraC-like ligand binding domain protein {ECO:0000313|EMBL:KGC06735.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
scnpilot_solids2_trim150_scaffold_1091_curated_26
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25237..25917
DNA (681bp) protein (227aa)
Ribonuclease H (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4]
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
Ribonuclease HII n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QKA8_METTR
scnpilot_solids2_trim150_scaffold_1091_curated_27
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26058..27146
DNA (1089bp) protein (363aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
DNA methylase N-4/N-6 domain-containing protein; K13581 modification methylase [EC:2.1.1.72]
DNA methylase N-4/N-6 domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQZ2_PARL1
scnpilot_solids2_trim150_scaffold_1091_curated_28
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27119..28369)
DNA (1251bp) protein (417aa)
A/G-specific adenine glycosylase; K03575 A/G-specific adenine glycosylase [EC:3.2.2.-]
A/G-specific adenine glycosylase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IQT7_METNO
A/G-specific adenine glycosylase {ECO:0000313|EMBL:ACL62382.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_1091_curated_29
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28422..28910
DNA (489bp) protein (163aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20Y92_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD89894.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
scnpilot_solids2_trim150_scaffold_1091_curated_30
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29008..29688
DNA (681bp) protein (227aa)
Periplasmic thiol:disulfide interchange protein DsbA n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RLL7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:GAK71783.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
conserved exported protein of unknown function
Displaying items 1-30 of 39 in total

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