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scnpilot_solids2_trim150_scaffold_1318_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1318_curated_1
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..393)
DNA (393bp) protein (131aa)
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
dihydrodipicolinate synthase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000364492C
scnpilot_solids2_trim150_scaffold_1318_curated_2
Streptomyces sp. WM6386, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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514..702
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K9G4_9SPHN
Alginate lyase {ECO:0000313|EMBL:KKD08091.1}; TaxID=1415558 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. WM6386.;"
hypothetical protein; K09984 hypothetical protein
scnpilot_solids2_trim150_scaffold_1318_curated_3
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

788..2983
DNA (2196bp) protein (732aa)
lytic transglycosylase catalytic subunit; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-]
Lytic transglycosylase catalytic n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX35_PARL1
Lytic transglycosylase catalytic subunit {ECO:0000313|EMBL:GAK44164.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
scnpilot_solids2_trim150_scaffold_1318_curated_4
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3017..3289)
DNA (273bp) protein (91aa)
Sel1 domain protein repeat-containing protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX23_PARL1
Sel1 domain-containing protein {ECO:0000313|EMBL:GAK44179.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Sel1 domain-containing protein; K07126
scnpilot_solids2_trim150_scaffold_1318_curated_5
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3740..3943)
DNA (204bp) protein (68aa)
Uncharacterized protein n=2 Tax=Xanthomonas oryzae pv. oryzae RepID=B2SSP8_XANOP
Uncharacterized protein {ECO:0000313|EMBL:AHY58052.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
histone H1
scnpilot_solids2_trim150_scaffold_1318_curated_6
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4177..5658)
DNA (1482bp) protein (494aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-); K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
glutamyl-tRNA amidotransferase subunit B n=1 Tax=Kaistia granuli RepID=UPI00038180F6
scnpilot_solids2_trim150_scaffold_1318_curated_7
Streptomyces katrae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(5645..6049)
DNA (405bp) protein (135aa)
endoribonuclease L-PSP n=1 Tax=Salisaeta longa RepID=UPI0003B5B599
Endoribonuclease L-PSP {ECO:0000313|EMBL:KJY28069.1}; TaxID=68223 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces katrae.;"
endoribonuclease L-PSP
scnpilot_solids2_trim150_scaffold_1318_curated_8
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6046..7536)
DNA (1491bp) protein (497aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
glutamyl-tRNA(Gln) amidotransferase n=1 Tax=Elioraea tepidiphila RepID=UPI000373A574
scnpilot_solids2_trim150_scaffold_1318_curated_9
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7536..7823)
DNA (288bp) protein (96aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
glutamyl-tRNA amidotransferase subunit C n=1 Tax=alpha proteobacterium L41A RepID=UPI0003709D2E
scnpilot_solids2_trim150_scaffold_1318_curated_10
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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7930..8295
DNA (366bp) protein (122aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CEA5_THET1
Uncharacterized protein {ECO:0000313|EMBL:CDO59486.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Glyoxalase/bleomycin resistance protein/dioxygenase
scnpilot_solids2_trim150_scaffold_1318_curated_11
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8302..8766
DNA (465bp) protein (155aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
putative Holliday junction resolvase; K07447 putative holliday junction resolvase [EC:3.1.-.-]
Putative Holliday junction resolvase n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NTP0_9RHOB
scnpilot_solids2_trim150_scaffold_1318_curated_12
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8834..10081
DNA (1248bp) protein (416aa)
Major facilitator superfamily MFS_1 n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T5L5_CAUSK
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABZ69573.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
scnpilot_solids2_trim150_scaffold_1318_curated_13
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10131..11099
DNA (969bp) protein (323aa)
aspartate carbamoyltransferase; K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
Aspartate carbamoyltransferase {ECO:0000255|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000255|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000255|HAMAP-Rule:MF_00001}; Short=ATCase {ECO:0000255|HAMAP-Rule:MF_00001};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Aspartate carbamoyltransferase n=2 Tax=Parvibaculum RepID=PYRB_PARL1
scnpilot_solids2_trim150_scaffold_1318_curated_14
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11096..12397
DNA (1302bp) protein (434aa)
Dihydroorotase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B8U2_9RHIZ
dihydroorotase
Tax=RBG_16_Alphaproteobacteria_64_48_curated
scnpilot_solids2_trim150_scaffold_1318_curated_15
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12394..13002
DNA (609bp) protein (203aa)
hypothetical protein; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15]
Glycerol-3-phosphate acyltransferase n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=PLSY_RHOS5
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
scnpilot_solids2_trim150_scaffold_1318_curated_16
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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13041..14153
DNA (1113bp) protein (371aa)
DNA processing protein DprA, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IN34_RHOCS
dprA; DNA processing protein DprA; K04096 DNA processing protein
DNA processing protein DprA, putative {ECO:0000313|EMBL:ACI98931.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
scnpilot_solids2_trim150_scaffold_1318_curated_17
unknown

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comp(14150..14338)
DNA (189bp) protein (63aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1318_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14601..17234
DNA (2634bp) protein (878aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
DNA topoisomerase I; K03168 DNA topoisomerase I [EC:5.99.1.2]
DNA topoisomerase 1 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX05_PARL1
scnpilot_solids2_trim150_scaffold_1318_curated_19
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17341..19524
DNA (2184bp) protein (728aa)
ribonuclease R; K12573 ribonuclease R [EC:3.1.-.-]
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Ribonuclease R n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX04_PARL1
scnpilot_solids2_trim150_scaffold_1318_curated_20
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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19573..20283
DNA (711bp) protein (237aa)
NUDIX hydrolase n=1 Tax=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) RepID=Q15SJ8_PSEA6
NUDIX hydrolase {ECO:0000313|EMBL:GAK46803.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
NUDIX hydrolase
Displaying 20 items

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