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scnpilot_solids2_trim150_scaffold_837_curated

Search features with annotation key words

Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_837_curated_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..951)
DNA (951bp) protein (317aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21BY7_RHOPB
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
scnpilot_solids2_trim150_scaffold_837_curated_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1169..3892
DNA (2724bp) protein (908aa)
Protein translocase subunit SecA n=2 Tax=Parvibaculum RepID=SECA_PARL1
preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA
Protein translocase subunit SecA {ECO:0000255|HAMAP-Rule:MF_01382}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_837_curated_3
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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4019..4975
DNA (957bp) protein (319aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas axonopodis pv. citrumelo F1 RepID=G2LRP1_9XANT
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_837_curated_4
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5083..5385
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T191_JANMA
hypothetical protein; K09914 putative lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:ABR90556.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
scnpilot_solids2_trim150_scaffold_837_curated_5
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5382..6536
DNA (1155bp) protein (385aa)
Epoxide hydrolase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTW4_PARL1
Epocide hydrolase domain-containing protein {ECO:0000313|EMBL:GAK45407.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
epocide hydrolase domain-containing protein
scnpilot_solids2_trim150_scaffold_837_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6549..6992)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B2W8_RHILS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS56816.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
scnpilot_solids2_trim150_scaffold_837_curated_7
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7011..7967)
DNA (957bp) protein (319aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2]
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhod
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SIV5_RHOPH
scnpilot_solids2_trim150_scaffold_837_curated_8
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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8116..8511
DNA (396bp) protein (132aa)
Uncharacterized proteim n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09AV8_STIAD
hypothetical protein
Uncharacterized proteim {ECO:0000313|EMBL:ADO72418.1}; Uncharacterized protein {ECO:0000313|EMBL:EAU68921.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
scnpilot_solids2_trim150_scaffold_837_curated_9
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8649..9572
DNA (924bp) protein (308aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMM8_9RHIZ
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EIM25220.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
RNA polymerase sigma factor SigJ; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_solids2_trim150_scaffold_837_curated_10

Not on your lists

comp(9582..9941)
DNA (360bp) protein (120aa)
Ribonuclease VapC n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X6H7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KKN80980.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PilT protein-like protein; K07062
scnpilot_solids2_trim150_scaffold_837_curated_11
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9938..10135)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q3B4_METSZ
Antitoxin {ECO:0000313|EMBL:KFG70611.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_837_curated_12
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10224..11213)
DNA (990bp) protein (330aa)
Malyl-CoA lyase {ECO:0000313|EMBL:CDO59153.1}; EC=4.1.3.24 {ECO:0000313|EMBL:CDO59153.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
citrate lyase (EC:4.1.3.6); K08691 malyl-CoA lyase [EC:4.1.3.24]
Malyl-CoA lyase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B53601
scnpilot_solids2_trim150_scaffold_837_curated_13
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11280..12257)
DNA (978bp) protein (326aa)
Tyrosine recombinase XerD n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RG36_PHEZH
integrase/recombinase DNA recombination protein; K04763 integrase/recombinase XerD
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
scnpilot_solids2_trim150_scaffold_837_curated_14
unknown

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comp(12238..12381)
DNA (144bp) protein (48aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_837_curated_15
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12517..13047
DNA (531bp) protein (177aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase n=1 Tax=Oceanibaculum indicum P24 RepID=K2K217_9PROT
scnpilot_solids2_trim150_scaffold_837_curated_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13044..14138
DNA (1095bp) protein (365aa)
3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
3-dehydroquinate synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTV3_PARL1
scnpilot_solids2_trim150_scaffold_837_curated_17
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14192..15490
DNA (1299bp) protein (433aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D717F7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS63335.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_837_curated_18
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15487..15762)
DNA (276bp) protein (92aa)
BolA family protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3THE0_TISMK
BolA family protein
BolA family protein {ECO:0000313|EMBL:AFK52178.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
scnpilot_solids2_trim150_scaffold_837_curated_19
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15846..16442
DNA (597bp) protein (199aa)
molecular chaperone DnaJ n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A01BAC
Molecular chaperone DnaJ {ECO:0000313|EMBL:ESW82474.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
scnpilot_solids2_trim150_scaffold_837_curated_20
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16526..17521
DNA (996bp) protein (332aa)
cobalt chelatase small subunit; K09882 cobaltochelatase CobS [EC:6.6.1.2]
Cobalt chelatase, pCobS small subunit n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTU9_PARL1
Cobalt chelatase, pCobS small subunit {ECO:0000313|EMBL:GAK45421.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
scnpilot_solids2_trim150_scaffold_837_curated_21
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17518..19380
DNA (1863bp) protein (621aa)
cobalt chelatase large subunit; K09883 cobaltochelatase CobT [EC:6.6.1.2]
Cobalt chelatase, pCobT subunit {ECO:0000313|EMBL:ABS63331.1}; EC=6.6.1.2 {ECO:0000313|EMBL:ABS63331.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Cobalt chelatase, pCobT subunit n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTU8_PARL1
scnpilot_solids2_trim150_scaffold_837_curated_22
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists


comp(19397..19651)
DNA (255bp) protein (85aa)
50S ribosomal protein L28 n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000379DD32
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28
scnpilot_solids2_trim150_scaffold_837_curated_23
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19764..20759)
DNA (996bp) protein (332aa)
arginine/ornithine transport system ATPase; K07588 LAO/AO transport system kinase [EC:2.7.-.-]
LAO/AO transport system ATPase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTU1_PARL1
LAO/AO transport system ATPase {ECO:0000313|EMBL:ABS63324.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_837_curated_24
unknown

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20872..21747
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000377B707
scnpilot_solids2_trim150_scaffold_837_curated_25
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21768..23936)
DNA (2169bp) protein (723aa)
methylmalonyl-CoA mutase; K01847 methylmalonyl-CoA mutase [EC:5.4.99.2]
Methylmalonyl-CoA mutase n=1 Tax=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) RepID=B9KNT9_RHOSK
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:ACM00367.1}; TaxID=557760 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain KD131 / KCTC 12085).;"
scnpilot_solids2_trim150_scaffold_837_curated_26
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24285..24719
DNA (435bp) protein (145aa)
Superfamily II DNA and RNA helicase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RFP3_PHEZH
DNA/RNA helicase-like protein {ECO:0000313|EMBL:AJE47996.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
superfamily II DNA and RNA helicase
scnpilot_solids2_trim150_scaffold_837_curated_27
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24743..26770
DNA (2028bp) protein (676aa)
Helicase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTT4_PARL1
helicase domain-containing protein
Helicase domain protein {ECO:0000313|EMBL:ABS63317.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_837_curated_28
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26767..27054
DNA (288bp) protein (96aa)
S4 domain protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LTJ6_RUEPO
S4 domain-containing protein; K04762 ribosome-associated heat shock protein Hsp15
S4 domain protein {ECO:0000313|EMBL:AAV94705.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
scnpilot_solids2_trim150_scaffold_837_curated_29
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27084..27422
DNA (339bp) protein (113aa)
4Fe-4S ferredoxin n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LMZ4_9RHIZ
Ferredoxin {ECO:0000313|EMBL:KFL26191.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
4Fe-4S ferredoxin; K05524 ferredoxin
scnpilot_solids2_trim150_scaffold_837_curated_30
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27743..28291
DNA (549bp) protein (183aa)
CarD family transcriptional regulator n=1 Tax=Meganema perideroedes RepID=UPI00037331F6
transcriptional regulator, CarD family
Transcriptional regulator, CarD family {ECO:0000313|EMBL:AGT08440.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
Displaying items 1-30 of 100 in total

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