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scnpilot_solids2_trim150_scaffold_721_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_721_curated_1
unknown

Not on your lists

1..705
DNA (705bp) protein (235aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_721_curated_2
unknown

Not on your lists

comp(1213..1428)
DNA (216bp) protein (72aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_721_curated_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2569..3879
DNA (1311bp) protein (437aa)
Transposase IS4 family protein n=1 Tax=mine drainage metagenome RepID=T1APD9_9ZZZZ
Transposase, IS4 family protein/SWIM domain fusion
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
scnpilot_solids2_trim150_scaffold_721_curated_4
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4086..4373
DNA (288bp) protein (96aa)
Tail protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EKA8_9RHOB
TP901-1 family phage major tail protein {ECO:0000313|EMBL:KHQ52266.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
TP901-1 family major tail protein
scnpilot_solids2_trim150_scaffold_721_curated_5
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4375..4743
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000349238D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAN51491.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
scnpilot_solids2_trim150_scaffold_721_curated_6
unknown

Not on your lists

4743..4892
DNA (150bp) protein (50aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_721_curated_7
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4885..5367
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QA68_BREDI
phage tail length tape measure-like protein
Uncharacterized protein {ECO:0000313|EMBL:EPE99025.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
scnpilot_solids2_trim150_scaffold_721_curated_8
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5369..5995
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003667A07
Gene Transfer Agent (GTA) ORFG12 {ECO:0000313|EMBL:CDP51999.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_721_curated_9
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5992..6885
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRK7_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS62540.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_721_curated_10
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6875..7438
DNA (564bp) protein (188aa)
peptidase n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039D9C05
NlpC/P60 family phage cell wall peptidase
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
scnpilot_solids2_trim150_scaffold_721_curated_11
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7472..11443
DNA (3972bp) protein (1324aa)
Putative phage tail protein/GTA TIM-barrel-like domain protein n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9R209_9RHOB
Gene transfer agent (GTA) protein {ECO:0000313|EMBL:KDB03213.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
gene transfer agent (GTA)-like protein
scnpilot_solids2_trim150_scaffold_721_curated_12
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11459..12889
DNA (1431bp) protein (477aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00035E8131
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB79580.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
scnpilot_solids2_trim150_scaffold_721_curated_13
R_OD1_Kaiserbacteria_56_24, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

12886..13860
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0TB63_9BRAD
exported hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_Kaiserbacteria_56_24_curated
scnpilot_solids2_trim150_scaffold_721_curated_14
unknown

Not on your lists

13950..14132
DNA (183bp) protein (61aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_721_curated_15
unknown

Not on your lists

14129..14500
DNA (372bp) protein (124aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_721_curated_16
unknown

Not on your lists

14497..14694
DNA (198bp) protein (66aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_721_curated_17
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14775..15461
DNA (687bp) protein (229aa)
Nitroreductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRL6_PARL1
nitroreductase
Nitroreductase {ECO:0000313|EMBL:ABS62549.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_721_curated_18
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15458..16459)
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ3 RepID=UPI0003828E03
Uncharacterized protein {ECO:0000313|EMBL:EAP90887.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_721_curated_19
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16748..17284
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NZI3_AZOS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI73812.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
scnpilot_solids2_trim150_scaffold_721_curated_20
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17235..17972
DNA (738bp) protein (246aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRL8_PARL1
Two-component system response regulator QseB {ECO:0000313|EMBL:CDO60685.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
scnpilot_solids2_trim150_scaffold_721_curated_21
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17995..19347
DNA (1353bp) protein (451aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRL9_PARL1
integral membrane sensor signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_721_curated_22
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19407..20795
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRM3_PARL1
Uncharacterized protein {ECO:0000313|EMBL:CDO60689.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_721_curated_23

Not on your lists

comp(20814..22010)
DNA (1197bp) protein (399aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRM5_PARL1
Uncharacterized protein {ECO:0000313|EMBL:KKO11504.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
L-carnitine dehydratase/bile acid-inducible protein F
scnpilot_solids2_trim150_scaffold_721_curated_24
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22218..22562
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NWQ7_AZOS1
Uncharacterized protein {ECO:0000313|EMBL:KJB96025.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_721_curated_25
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22623..23129
DNA (507bp) protein (169aa)
cytochrome C n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B7535C
ccmE; CcmE/CycJ protein
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; TaxID=1316936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
scnpilot_solids2_trim150_scaffold_721_curated_26
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23126..25093
DNA (1968bp) protein (656aa)
Cytochrome c-type biogenesis protein CcmF n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRN1_PARL1
cytochrome c-type biogenesis protein CcmF; K02198 cytochrome c-type biogenesis protein CcmF
Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:ABS62564.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_721_curated_27
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25090..25539
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003642416
ccmH; cytochrome C-type biogenesis protein CcmH; K02200 cytochrome c-type biogenesis protein CcmH
Protein involved in biosynthesis of c-type cytochromes {ECO:0000313|EMBL:EJL29663.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
scnpilot_solids2_trim150_scaffold_721_curated_28
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25690..27255
DNA (1566bp) protein (522aa)
hypothetical protein n=1 Tax=Woodsholea maritima RepID=UPI00035DE0B9
Protease Do {ECO:0000313|EMBL:GAK44837.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
dop; serine protease DO-like protease
scnpilot_solids2_trim150_scaffold_721_curated_29
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27308..27985
DNA (678bp) protein (226aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRN4_PARL1
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABS62567.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_721_curated_30
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27972..29378
DNA (1407bp) protein (469aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRN5_PARL1
integral membrane sensor signal transduction histidine kinase
Displaying items 1-30 of 31 in total

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