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scnpilot_solids2_trim150_scaffold_2666_curated

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2666_curated_1
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..125)
DNA (123bp) protein (41aa)
potassium:proton antiporter n=1 Tax=Sphingobium chinhatense RepID=UPI00037508F7
Potassium:proton antiporter {ECO:0000313|EMBL:KER35284.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
pH adaptation potassium efflux system protein PhaG; K05564 multicomponent K+:H+ antiporter subunit G
scnpilot_solids2_trim150_scaffold_2666_curated_2
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122..403)
DNA (282bp) protein (94aa)
Cation:proton antiporter n=1 Tax=Sphingobium baderi LL03 RepID=T0GC88_9SPHN
Cation:proton antiporter {ECO:0000313|EMBL:EQA97672.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
phaF; monovalent cation/H+ antiporter subunit F; K05563 multicomponent K+:H+ antiporter subunit F
scnpilot_solids2_trim150_scaffold_2666_curated_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(400..885)
DNA (486bp) protein (162aa)
Multisubunit potassium/proton antiporter, PhaE subunit n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPJ1_NITHX
monovalent cation/H+ antiporter subunit E; K05562 multicomponent K+:H+ antiporter subunit E
Multisubunit potassium/proton antiporter, PhaE subunit {ECO:0000313|EMBL:ABE61856.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_2666_curated_4
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(882..2534)
DNA (1653bp) protein (551aa)
NADH dehydrogenase subunit N n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BLD2_9GAMM
Monovalent cation/H+ antiporter subunit D {ECO:0000313|EMBL:EXL10517.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
putative monovalent cation/H+ antiporter subunit D; K05561 multicomponent K+:H+ antiporter subunit D
scnpilot_solids2_trim150_scaffold_2666_curated_5
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2531..2875)
DNA (345bp) protein (115aa)
Putative K(+)/H(+) antiporter subunit C n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XDF3_RHIFR
phaC2; K(+)/H(+) antiporter subunit C
Monovalent cation/H+ antiporter subunit C {ECO:0000313|EMBL:KEC76664.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
scnpilot_solids2_trim150_scaffold_2666_curated_6
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2875..5781)
DNA (2907bp) protein (969aa)
Tmonovalent cation:proton antiporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKY5_9RHIZ
Tmonovalent cation:proton antiporter {ECO:0000313|EMBL:EIM24627.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
NADH/ubiquinone/plastoquinone; K05559 multicomponent K+:H+ antiporter subunit A
scnpilot_solids2_trim150_scaffold_2666_curated_7
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5978..6634)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B7Y4_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK59744.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
scnpilot_solids2_trim150_scaffold_2666_curated_8
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6767..7771
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DKA6_BRAJP
Alcohol dehydrogenase {ECO:0000313|EMBL:AHY56686.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2666_curated_9
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7796..8557)
DNA (762bp) protein (254aa)
Putative methyltransferase n=1 Tax=Caulobacter sp. AP07 RepID=J2HLG1_9CAUL
Putative methyltransferase {ECO:0000313|EMBL:EJL36558.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
methyltransferase
scnpilot_solids2_trim150_scaffold_2666_curated_10
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8927..10540)
DNA (1614bp) protein (538aa)
Holin-like protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IDW0_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig184, whole genome shotgun sequence {ECO:0000313|EMBL:KIU45231.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2666_curated_11
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10562..11983
DNA (1422bp) protein (474aa)
PREDICTED: cationic amino acid transporter 2, vacuolar-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1B17A
amino acid permease; K03294 basic amino acid/polyamine antiporter, APA family
Amino acid permease-associated region {ECO:0000313|EMBL:ADG12180.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
scnpilot_solids2_trim150_scaffold_2666_curated_12
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12083..12649
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TLC6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP66028.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2666_curated_13
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12710..14368
DNA (1659bp) protein (553aa)
Permeases of the major facilitator superfamily n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2YRJ1_9CAUL
major facilitator superfamily permease
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
scnpilot_solids2_trim150_scaffold_2666_curated_14
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14411..14887)
DNA (477bp) protein (159aa)
Proline dehydrogenase transcriptional activator n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VA08_9RHOB
Putative leucine-responsive regulatory protein {ECO:0000313|EMBL:KCV82988.1}; TaxID=1461693 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium atlanticum.;"
putative leucine-responsive regulatory protein
scnpilot_solids2_trim150_scaffold_2666_curated_15
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15196..16146
DNA (951bp) protein (317aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881, ECO:0000313|EMBL:CDO58735.1}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881, ECO:0000313|EMBL:CDO58735.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
trxB; thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
thioredoxin reductase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B645B2
scnpilot_solids2_trim150_scaffold_2666_curated_16
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16151..17047
DNA (897bp) protein (299aa)
LysR family transcriptional regulator n=1 Tax=Thalassospira lucentensis RepID=UPI0003B3AFA9
LysR family transcriptional regulator {ECO:0000313|EMBL:EKF09417.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
transcriptional regulator, LysR family protein
scnpilot_solids2_trim150_scaffold_2666_curated_17
unknown

Not on your lists

17088..17237
DNA (150bp) protein (50aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2666_curated_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17257..18126
DNA (870bp) protein (290aa)
oxidoreductase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A6536
alcohol dehydrogenase; K07119
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
scnpilot_solids2_trim150_scaffold_2666_curated_19
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18134..18604)
DNA (471bp) protein (157aa)
Ferritin, Dps family protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VGE0_SPHWW
Ferritin, Dps family protein; K04047 starvation-inducible DNA-binding protein
Ferritin, Dps family protein {ECO:0000313|EMBL:ABQ71356.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_solids2_trim150_scaffold_2666_curated_20
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18690..19544
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GFN2_9BACT
Putative metalloprotease {ECO:0000313|EMBL:EXI76620.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
hypothetical protein; K07054
scnpilot_solids2_trim150_scaffold_2666_curated_21
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19687..20667)
DNA (981bp) protein (327aa)
Translation elongation factor G-related protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UFK5_9RHOB
fusA; elongation factor G; K02355 elongation factor G
Tax=RBG_16_Alphaproteobacteria_64_48_curated
Displaying 21 items

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