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scnpilot_solids2_trim150_scaffold_430_curated

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_430_curated_1
unknown

Not on your lists

comp(9..710)
DNA (702bp) protein (234aa)
type 12 methyltransferase; K15256 tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
Methyltransferase type 12 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRQ9_PARL1
Methyltransferase type 12 {ECO:0000313|EMBL:CPR22503.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
scnpilot_solids2_trim150_scaffold_430_curated_2
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(700..1161)
DNA (462bp) protein (154aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V8A8_SPHWW
BadM/Rrf2 family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:ABQ68524.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_solids2_trim150_scaffold_430_curated_3
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1194..3209)
DNA (2016bp) protein (672aa)
Putative O-acetyl transferase {ECO:0000313|EMBL:CCM78252.1}; EC=2.3.1.- {ECO:0000313|EMBL:CCM78252.1};; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
Putative O-acetyl transferase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q2A1_9RHIZ
acyltransferase 3
scnpilot_solids2_trim150_scaffold_430_curated_4
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3479..6439
DNA (2961bp) protein (987aa)
UvrABC system protein A n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KI11_9RHIZ
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A
scnpilot_solids2_trim150_scaffold_430_curated_5
unknown

Not on your lists

6451..6633
DNA (183bp) protein (61aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_430_curated_6
Candidatus Magnetoovum chiemensis, Candidatus Magnetoovum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

6773..7033
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6LA67_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KJR40983.1}; TaxID=1609970 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetoovum.;" source="Candidatus Magnetoovum chiemensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_430_curated_7
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7041..7427)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8Z1C0_9GAMM
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_71_12_curated
scnpilot_solids2_trim150_scaffold_430_curated_8
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7408..7674)
DNA (267bp) protein (89aa)
UPI0003D0653F related cluster n=1 Tax=unknown RepID=UPI0003D0653F
Antitoxin {ECO:0000313|EMBL:ESZ87398.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
prevent-host-death family protein
scnpilot_solids2_trim150_scaffold_430_curated_9
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7766..8620)
DNA (855bp) protein (285aa)
phosphomannose isomerase-like protein; K01809 mannose-6-phosphate isomerase [EC:5.3.1.8]
Phosphomannose isomerase-like protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GSR7_SPHAL
Phosphomannose isomerase-like protein {ECO:0000313|EMBL:AJA09030.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
scnpilot_solids2_trim150_scaffold_430_curated_10

Not on your lists

comp(8637..9086)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2B2H8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD74580.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
glyoxalase/bleomycin resistance protein/dioxygenase; K04750 PhnB protein
scnpilot_solids2_trim150_scaffold_430_curated_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9156..9752
DNA (597bp) protein (199aa)
Transcriptional regulator, TetR family n=1 Tax=uncultured bacterium RepID=K2BLZ9_9BACT
regulatory protein TetR
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
scnpilot_solids2_trim150_scaffold_430_curated_12
unknown

Not on your lists

comp(9757..10659)
DNA (903bp) protein (301aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_430_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10777..12207
DNA (1431bp) protein (477aa)
amidase; K01426 amidase [EC:3.5.1.4]
Amidase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W2I3_9SPHN
Amidase {ECO:0000313|EMBL:ENY81722.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
scnpilot_solids2_trim150_scaffold_430_curated_14
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12210..13643
DNA (1434bp) protein (478aa)
amidase; K01426 amidase [EC:3.5.1.4]
Amidase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W2I3_9SPHN
Amidase {ECO:0000313|EMBL:GAK43978.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
scnpilot_solids2_trim150_scaffold_430_curated_15
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13694..15127
DNA (1434bp) protein (478aa)
Amidase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXL6_PARL1
Amidase {ECO:0000313|EMBL:GAK43979.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
amidase
scnpilot_solids2_trim150_scaffold_430_curated_16
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15212..16564
DNA (1353bp) protein (451aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089752}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089759};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TKV5_TISMK
glucose-inhibited division protein A
scnpilot_solids2_trim150_scaffold_430_curated_17
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16704..17546)
DNA (843bp) protein (281aa)
squalene/phytoene synthase; K02291 phytoene synthase [EC:2.5.1.32]
Squalene/phytoene synthase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UI95_METS4
Squalene/phytoene synthase {ECO:0000313|EMBL:ACA16946.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_430_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17659..18273)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXL3_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS64646.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_430_curated_19
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18414..20021)
DNA (1608bp) protein (536aa)
preprotein translocase subunit SecD n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B7ADE0
Preprotein translocase subunit SecD/SecF {ECO:0000313|EMBL:AJY47142.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
protein-export membrane protein SecD; K12257 SecD/SecF fusion protein
scnpilot_solids2_trim150_scaffold_430_curated_20
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20030..20332)
DNA (303bp) protein (101aa)
Preprotein translocase, YajC subunit n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U2N2_9RHOB
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EAQ01606.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC
scnpilot_solids2_trim150_scaffold_430_curated_21
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20467..21363
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXK8_PARL1
Conserved protein {ECO:0000313|EMBL:GAK43987.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein; K06923
scnpilot_solids2_trim150_scaffold_430_curated_22
unknown

Not on your lists

comp(21510..22436)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000366F1F9
Peptidase M23 {ECO:0000313|EMBL:CPR20446.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
peptidase M23B
scnpilot_solids2_trim150_scaffold_430_curated_23
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22414..23094)
DNA (681bp) protein (227aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090, ECO:0000313|EMBL:CDO61214.1}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090, ECO:0000313|EMBL:CDO61214.1};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein L-isoaspartyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein-beta-aspartate methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinob
protein-L-isoaspartate O-methyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZBE0_9PROT
scnpilot_solids2_trim150_scaffold_430_curated_24
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23091..23900)
DNA (810bp) protein (270aa)
stationary-phase survival protein SurE; K03787 5'-nucleotidase [EC:3.1.3.5]
5'-nucleotidase SurE {ECO:0000255|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000255|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000255|HAMAP-Rule:MF_00060}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
5'-nucleotidase SurE n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=SURE_PARL1
scnpilot_solids2_trim150_scaffold_430_curated_25
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24194..25453)
DNA (1260bp) protein (420aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
seryl-tRNA ligase (EC:6.1.1.11)
Seryl-tRNA synthetase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SEV7_9RHIZ
scnpilot_solids2_trim150_scaffold_430_curated_26
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26160..26546
DNA (387bp) protein (129aa)
membrane protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000364FD3A
Uncharacterized protein {ECO:0000313|EMBL:GAO40175.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_430_curated_27
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26580..27446
DNA (867bp) protein (289aa)
ribosomal L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-]
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Ribosomal protein L11 methyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVW1_PARL1
scnpilot_solids2_trim150_scaffold_430_curated_28
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27457..29280
DNA (1824bp) protein (608aa)
peptidase M24; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9]
Peptidase M24 n=1 Tax=Oceanibaculum indicum P24 RepID=K2IZS1_9PROT
Peptidase M24 {ECO:0000313|EMBL:EKE68393.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
scnpilot_solids2_trim150_scaffold_430_curated_29
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29280..30290
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IWQ7_RHOCS
Enterochelin esterase {ECO:0000313|EMBL:KGM35115.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_430_curated_30
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30287..32311)
DNA (2025bp) protein (675aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
NAD-dependent DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000375C0ED
Displaying items 1-30 of 89 in total

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