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scnpilot_solids2_trim150_scaffold_2251_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2251_curated_1
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..88
DNA (87bp) protein (29aa)
30S ribosomal protein S10 n=3 Tax=Acidiphilium RepID=RS10_ACICJ
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
scnpilot_solids2_trim150_scaffold_2251_curated_2
unknown

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132..440
DNA (309bp) protein (103aa)
scnpilot_solids2_trim150_scaffold_2251_curated_3
alpha proteobacterium RS24, Alphaproteobacteria, Proteobacteria, Bacteria

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452..1201
DNA (750bp) protein (250aa)
50S ribosomal protein L3 n=1 Tax=Methylosinus sp. LW4 RepID=UPI000370E0F5
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1397666 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium RS24.;"
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
scnpilot_solids2_trim150_scaffold_2251_curated_4
bacterium YEK0313, Bacteria

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1205..1852
DNA (648bp) protein (216aa)
50S ribosomal protein L4 n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E6CDD3
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
scnpilot_solids2_trim150_scaffold_2251_curated_5
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1849..2136
DNA (288bp) protein (96aa)
50S ribosomal protein L23 n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IRQ8_RHOCS
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
scnpilot_solids2_trim150_scaffold_2251_curated_6
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2139..2975
DNA (837bp) protein (279aa)
50S ribosomal protein L2 n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI00039CA06B
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
50S ribosomal protein L2 {ECO:0000255|HAMAP-Rule:MF_01320}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
scnpilot_solids2_trim150_scaffold_2251_curated_7
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2980..3258
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EE6A2A
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
scnpilot_solids2_trim150_scaffold_2251_curated_8
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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3258..3764
DNA (507bp) protein (169aa)
50S ribosomal protein L22 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWR6_PARL1
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
scnpilot_solids2_trim150_scaffold_2251_curated_9
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3764..4486
DNA (723bp) protein (241aa)
30S ribosomal protein S3 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RS3_PARL1
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3
30S ribosomal protein S3 {ECO:0000255|HAMAP-Rule:MF_01309}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_2251_curated_10
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4499..4912
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RML7_9RHIZ
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
scnpilot_solids2_trim150_scaffold_2251_curated_11
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4913..5125
DNA (213bp) protein (71aa)
50S ribosomal protein L29 n=1 Tax=Amorphus coralli RepID=UPI00035D6F40
rpmC; 50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
50S ribosomal protein L29 {ECO:0000255|HAMAP-Rule:MF_00374}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
scnpilot_solids2_trim150_scaffold_2251_curated_12
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5145..5387
DNA (243bp) protein (81aa)
30S ribosomal protein S17 n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QTQ1_METTR
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
30S ribosomal protein S17 {ECO:0000255|HAMAP-Rule:MF_01345}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_2251_curated_13
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5415..5783
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035C5210
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
Tax=RBG_16_Alphaproteobacteria_64_48_curated
scnpilot_solids2_trim150_scaffold_2251_curated_14
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5783..6097
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWB8_9RHIZ
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
scnpilot_solids2_trim150_scaffold_2251_curated_15
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6090..6746
DNA (657bp) protein (219aa)
50S ribosomal protein L5 n=1 Tax=Methylocystis parvus RepID=UPI0002F19735
rplE; 50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000313|EMBL:CCJ06718.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
scnpilot_solids2_trim150_scaffold_2251_curated_16
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6754..7059
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y217_9PROT
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
rpsN; 30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
scnpilot_solids2_trim150_scaffold_2251_curated_17
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7074..7472
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RS8_HYPNA
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha PS728.;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
scnpilot_solids2_trim150_scaffold_2251_curated_18
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7472..8005
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Rhodovulum sp. PH10 RepID=J6J935_9RHOB
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
scnpilot_solids2_trim150_scaffold_2251_curated_19
Thalassospira permensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8002..8352
DNA (351bp) protein (117aa)
50S ribosomal protein L18 n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2LNQ3_9PROT
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1353532 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira permensis NBRC 106175.;"
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
scnpilot_solids2_trim150_scaffold_2251_curated_20
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8384..8959
DNA (576bp) protein (192aa)
30S ribosomal protein S5 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RS5_PARL1
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
30S ribosomal protein S5 {ECO:0000255|HAMAP-Rule:MF_01307}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_2251_curated_21
unknown

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8963..9160
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI0003682699
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
scnpilot_solids2_trim150_scaffold_2251_curated_22
RIFOXYD12_FULL_Rhodospirillales_60_8_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9157..9717
DNA (561bp) protein (187aa)
50S ribosomal protein L15 n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002DABE80
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
Tax=RIFOXYD12_FULL_Rhodospirillales_60_8_curated
scnpilot_solids2_trim150_scaffold_2251_curated_23
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9777..10676
DNA (900bp) protein (300aa)
Protein translocase subunit SecY n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWT1_PARL1
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Displaying 23 items

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