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scnpilot_solids2_trim150_scaffold_188_curated

Search features with annotation key words

Displaying items 1-30 of 110 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_188_curated_1
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..422
DNA (420bp) protein (140aa)
Acyl-CoA dehydrogenase, long-chain specific,mitochondrial {ECO:0000313|EMBL:CDO60733.1}; EC=1.3.8.8 {ECO:0000313|EMBL:CDO60733.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Acyl-CoA dehydrogenase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRZ9_PARL1
acyl-CoA dehydrogenase domain-containing protein
scnpilot_solids2_trim150_scaffold_188_curated_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

502..1632
DNA (1131bp) protein (377aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HS00_PARL1
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABS62683.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_188_curated_3
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1713..3134)
DNA (1422bp) protein (474aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PRP2_9BRAD
putative sensor histidine kinase, membrane protein
scnpilot_solids2_trim150_scaffold_188_curated_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3359..4156
DNA (798bp) protein (266aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HS02_PARL1
enoyl-CoA hydratase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ABS62685.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_188_curated_5
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4235..4525
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002D2BB1F
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
scnpilot_solids2_trim150_scaffold_188_curated_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4522..5241)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRC1_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30040.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_188_curated_7
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5254..6834)
DNA (1581bp) protein (527aa)
serA; D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
D-3-phosphoglycerate dehydrogenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RAT3_PHEZH
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:ACG79681.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
scnpilot_solids2_trim150_scaffold_188_curated_8
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6994..9039)
DNA (2046bp) protein (682aa)
Phosphoserine transaminase {ECO:0000256|SAAS:SAAS00182444}; EC=2.6.1.52 {ECO:0000256|SAAS:SAAS00182444};; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
phosphoserine aminotransferase; K00831 phosphoserine aminotransferase [EC:2.6.1.52]
Phosphoserine aminotransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HV18_PARL1
scnpilot_solids2_trim150_scaffold_188_curated_9
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9128..10024)
DNA (897bp) protein (299aa)
RNA polymerase sigma factor RpoH n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HV40_PARL1
RNA polymerase sigma-32 subunit RpoH; K03089 RNA polymerase sigma-32 factor
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_188_curated_10
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10135..11103)
DNA (969bp) protein (323aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
rluD; ribosomal large subunit pseudouridine synthase D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036BE620
scnpilot_solids2_trim150_scaffold_188_curated_11
unknown

Not on your lists

11180..11485
DNA (306bp) protein (102aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_188_curated_12
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11482..11907
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037B73AF
Mov34/MPN/PAD-1 family protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
scnpilot_solids2_trim150_scaffold_188_curated_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12051..12842
DNA (792bp) protein (264aa)
Methyltransferase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JKW3_AGRRK
methyltransferase
Methyltransferase protein {ECO:0000313|EMBL:ACM30555.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
scnpilot_solids2_trim150_scaffold_188_curated_14
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12885..13442)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HF60_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig182, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46356.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
probable transcriptional regulator protein TetR family
scnpilot_solids2_trim150_scaffold_188_curated_15
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13545..14327
DNA (783bp) protein (261aa)
Hydroxymethylglutaryl-CoA lyase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IH95_9BRAD
Enoyl-CoA hydratase {ECO:0000313|EMBL:KJC46840.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
enoyl-CoA hydratase
scnpilot_solids2_trim150_scaffold_188_curated_16
unknown

Not on your lists

14512..14760
DNA (249bp) protein (83aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_188_curated_17
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14995..15198
DNA (204bp) protein (68aa)
cold-shock protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000380D88B
cold shock protein
Putative cold shock-like transcription regulator protein {ECO:0000313|EMBL:EAP89420.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
scnpilot_solids2_trim150_scaffold_188_curated_18
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15491..17161
DNA (1671bp) protein (557aa)
Signal transduction histidine kinase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20ZP3_RHOPB
Uncharacterized protein {ECO:0000313|EMBL:KFG67447.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_188_curated_19
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17324..17941
DNA (618bp) protein (206aa)
Transcriptional regulator n=1 Tax=Caulobacter sp. AP07 RepID=J2ZUW1_9CAUL
Transcriptional regulator {ECO:0000313|EMBL:EJL22494.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
TetR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_188_curated_20
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18021..18233)
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A90845
CsbD family protein
Uncharacterized protein {ECO:0000313|EMBL:EJW10088.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
scnpilot_solids2_trim150_scaffold_188_curated_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18293..20221)
DNA (1929bp) protein (643aa)
Possible membrane transport protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N349_RHOPA
membrane transporter
Possible membrane transport protein {ECO:0000313|EMBL:CAE29286.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
scnpilot_solids2_trim150_scaffold_188_curated_22
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20431..21372
DNA (942bp) protein (314aa)
Protein-export membrane protein SecF n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ISI3_RHOCS
secF; protein-export membrane protein SecF; K03074 preprotein translocase subunit SecF
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
scnpilot_solids2_trim150_scaffold_188_curated_23
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21414..22052)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B76333
Uncharacterized protein {ECO:0000313|EMBL:CDO58870.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_188_curated_24
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22214..22471
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z3J6_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM87417.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
scnpilot_solids2_trim150_scaffold_188_curated_25
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22513..23322)
DNA (810bp) protein (270aa)
3'(2'),5'-bisphosphate nucleotidase; K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
3'(2'),5'-bisphosphate nucleotidase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HV53_PARL1
3'(2'),5'-bisphosphate nucleotidase {ECO:0000313|EMBL:ABS63786.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_188_curated_26
unknown

Not on your lists

23733..24302
DNA (570bp) protein (190aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_188_curated_27
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24472..25092
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUT2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM27724.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein; K13588 histidine phosphotransferase ChpT
scnpilot_solids2_trim150_scaffold_188_curated_28
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25297..25662
DNA (366bp) protein (122aa)
chemotaxis protein CheY n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037CFB62
cheY; response regulator receiver domain-containing protein (CheY-like); K03413 two-component system, chemotaxis family, response regulator CheY
Response regulator receiver domain protein (CheY-like) {ECO:0000313|EMBL:ADZ69379.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_188_curated_29
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25703..26545
DNA (843bp) protein (281aa)
chemotaxis protein CheR; K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
Chemotaxis protein methyltransferase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UCS7_METS4
Chemotaxis protein methyltransferase Cher2 {ECO:0000313|EMBL:GAK33142.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
scnpilot_solids2_trim150_scaffold_188_curated_30
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26556..29840)
DNA (3285bp) protein (1095aa)
Carbamoyl-phosphate synthase L chain ATP-binding n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWL7_PARL1
Carbamoyl-phosphate synthase large subunit {ECO:0000313|EMBL:KIF81143.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
carbamoyl-phosphate synthase L chain ATP-binding
Displaying items 1-30 of 110 in total

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