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scnpilot_solids2_trim150_scaffold_1529_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1529_curated_1
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..853)
DNA (852bp) protein (284aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRZ9_PARL1
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABS62682.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_1529_curated_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(974..1675)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DCM6_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA26992.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
scnpilot_solids2_trim150_scaffold_1529_curated_3
Acetobacter tropicalis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1745..2047)
DNA (303bp) protein (101aa)
Acetobacter tropicalis DNA, scaffold: scf_atr1_v1048, strain NBRC 16470, whole genome shotgun sequence {ECO:0000313|EMBL:GAL96699.1}; Chorismate mutase I {ECO:0000313|EMBL:KGB21222.1}; EC=5.4.99.5 {ECO:0000313|EMBL:KGB21222.1};; TaxID=104102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter tropicalis.;"
chorismate mutase; K04092 chorismate mutase [EC:5.4.99.5]
chorismate mutase n=1 Tax=Aestuariimicrobium kwangyangense RepID=UPI0003B62B4E
scnpilot_solids2_trim150_scaffold_1529_curated_4
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2044..2658)
DNA (615bp) protein (205aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; K03186 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX [EC:4.1.1.-]
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034791BE
scnpilot_solids2_trim150_scaffold_1529_curated_5
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2850..3362
DNA (513bp) protein (171aa)
Putative transcription regulator protein n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8N4G4_RALSL
MarR family transcriptional regulator {ECO:0000313|EMBL:AJW43536.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
Transcriptional regulator, MarR family
scnpilot_solids2_trim150_scaffold_1529_curated_6
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3359..4810
DNA (1452bp) protein (484aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI000360CFCB
RND efflux system outer membrane lipoprotein
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:ABQ69577.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_solids2_trim150_scaffold_1529_curated_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4807..6021
DNA (1215bp) protein (405aa)
HlyD secretion family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WVP3_9SPHN
Hemolysin D {ECO:0000313|EMBL:AIT07118.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
secretion protein HlyD family protein; K03543 multidrug resistance protein A
scnpilot_solids2_trim150_scaffold_1529_curated_8
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

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6018..7571
DNA (1554bp) protein (518aa)
Inner membrane component of tripartite multidrug resistance system n=1 Tax=alpha proteobacterium JLT2015 RepID=M2U8A4_9PROT
Inner membrane component of tripartite multidrug resistance system {ECO:0000313|EMBL:EMD84207.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
scnpilot_solids2_trim150_scaffold_1529_curated_9
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7602..8237)
DNA (636bp) protein (212aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|SAAS:SAAS00064138};; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
Flavoprotein WrbA n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IH04_BEII9
flavoprotein WrbA; K03809 Trp repressor binding protein
scnpilot_solids2_trim150_scaffold_1529_curated_10
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8251..8616)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037ECB5C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAD16302.1}; TaxID=267608 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (strain GMI1000) (Pseudomonas solanacearum).;"
scnpilot_solids2_trim150_scaffold_1529_curated_11
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8656..9078
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4REL7_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG78543.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
scnpilot_solids2_trim150_scaffold_1529_curated_12
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9113..9865)
DNA (753bp) protein (251aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:CDO59618.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CDO59618.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
enoyl-CoA hydratase n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00037FE583
enoyl-CoA hydratase/isomerase
scnpilot_solids2_trim150_scaffold_1529_curated_13
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9936..10574
DNA (639bp) protein (213aa)
MarC-like protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QNE6_9BRAD
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
antibiotic resistance protein; K05595 multiple antibiotic resistance protein
scnpilot_solids2_trim150_scaffold_1529_curated_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10594..11415)
DNA (822bp) protein (274aa)
Endonuclease/exonuclease/phosphatase n=2 Tax=Acidiphilium RepID=A5FYF7_ACICJ
endonuclease/exonuclease/phosphatase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
scnpilot_solids2_trim150_scaffold_1529_curated_15
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11556..12998
DNA (1443bp) protein (481aa)
phospholipase D/transphosphatidylase; K06131 cardiolipin synthase [EC:2.7.8.-]
Cardiolipin synthase Cls {ECO:0000313|EMBL:KDM66282.1}; EC=2.7.8.- {ECO:0000313|EMBL:KDM66282.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
Cardiolipin synthetase 2 n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FYF8_ACICJ
scnpilot_solids2_trim150_scaffold_1529_curated_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13065..14456
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTA1_PARL1
hypothetical protein; K07403 membrane-bound serine protease (ClpP class)
Uncharacterized protein {ECO:0000313|EMBL:ABS63134.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_1529_curated_17
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14462..15223
DNA (762bp) protein (254aa)
Band 7 protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTA0_PARL1
hypothetical protein
Band 7 protein {ECO:0000313|EMBL:ABS63133.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_1529_curated_18
unknown

Not on your lists

comp(15236..15535)
DNA (300bp) protein (100aa)

This feature has no annotations

Displaying 18 items

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