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scnpilot_solids2_trim150_scaffold_350_curated

Search features with annotation key words

Displaying items 1-30 of 250 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_350_curated_1
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

325..753
DNA (429bp) protein (143aa)
Esterase n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2EGS0_9BURK
Esterase {ECO:0000313|EMBL:EKZ98545.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
esterase
scnpilot_solids2_trim150_scaffold_350_curated_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(804..1949)
DNA (1146bp) protein (382aa)
Esterase A n=1 Tax=Streptomyces sp. PAMC26508 RepID=M9TTS6_9ACTO
esterase A
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
scnpilot_solids2_trim150_scaffold_350_curated_3
Hyphomonas oceanitis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2038..2403
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI000360F3E2
Uncharacterized protein {ECO:0000313|EMBL:KDA04055.1}; TaxID=1280953 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas oceanitis SCH89.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_350_curated_4
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2416..3420)
DNA (1005bp) protein (335aa)
Hypothetical membrane spanning protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVM2_GRABC
Uncharacterized protein {ECO:0000313|EMBL:GAN77299.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_350_curated_5
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3417..4700)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=2 Tax=Acidiphilium RepID=F0J3X5_ACIMA
Uncharacterized protein {ECO:0000313|EMBL:GAN76015.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_350_curated_6
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4774..7536)
DNA (2763bp) protein (921aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9]
Valine--tRNA ligase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PPH3_9RHOB
scnpilot_solids2_trim150_scaffold_350_curated_7
unknown

Not on your lists

comp(7737..8318)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLA9_AFIFE
scnpilot_solids2_trim150_scaffold_350_curated_8
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8443..9810)
DNA (1368bp) protein (456aa)
Type I secretion outer membrane protein, TolC family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXH8_PARL1
Type I secretion outer membrane protein, TolC {ECO:0000313|EMBL:CDO61241.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
TolC family type I secretion outer membrane protein; K12340 outer membrane channel protein
scnpilot_solids2_trim150_scaffold_350_curated_9
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9852..10475)
DNA (624bp) protein (208aa)
protein-L-isoaspartate(D-aspartate) O-methyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
Protein-L-isoaspartate(D-aspartate) O-methyltransferase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11I11_MESSB
Protein-L-isoaspartate(D-aspartate) O-methyltransferase {ECO:0000313|EMBL:KFB09862.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
scnpilot_solids2_trim150_scaffold_350_curated_10
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11040..11294)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AII9_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:GAK71192.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_350_curated_11
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11519..12649)
DNA (1131bp) protein (377aa)
NADH:flavin oxidoreductase/NADH oxidase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWL8_PARL1
NADH:flavin oxidoreductase
NADH:flavin oxidoreductase/NADH oxidase {ECO:0000313|EMBL:ABS64301.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_350_curated_12
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12830..13435
DNA (606bp) protein (202aa)
Transcriptional regulator, TetR family n=2 Tax=Cupriavidus RepID=Q1LPM7_RALME
TetR family transcriptional regulator {ECO:0000313|EMBL:KFA91545.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
TetR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_350_curated_13
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13466..14218)
DNA (753bp) protein (251aa)
Putative integral membrane transmembrane protein n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8NEF8_RALSL
Membrane protein {ECO:0000313|EMBL:KFF30207.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
putative integral membrane transmembrane protein
scnpilot_solids2_trim150_scaffold_350_curated_14
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14311..15732)
DNA (1422bp) protein (474aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00030347F2
voltage-gated chloride channel
Putative chloride channel family protein {ECO:0000313|EMBL:AEI06361.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_350_curated_15
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15875..16330)
DNA (456bp) protein (152aa)
transcriptional regulator n=1 Tax=Kaistia granuli RepID=UPI0003655E51
AsnC family transcriptional regulator
Putative transcriptional regulator, AsnC family {ECO:0000313|EMBL:CCF01020.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
scnpilot_solids2_trim150_scaffold_350_curated_16
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16466..17377
DNA (912bp) protein (304aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608};; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
dadX-1; alanine racemase 1 (EC:5.1.1.1)
Alanine racemase n=1 Tax=Rhizobium sp. Pop5 RepID=K0VJB8_9RHIZ
scnpilot_solids2_trim150_scaffold_350_curated_17
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17389..18645
DNA (1257bp) protein (419aa)
D-amino acid dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01202}; EC=1.4.99.1 {ECO:0000256|HAMAP-Rule:MF_01202};; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
dadA; D-amino acid dehydrogenase small subunit (EC:1.4.99.1); K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
D-amino acid dehydrogenase small subunit n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JGI6_9RHIZ
scnpilot_solids2_trim150_scaffold_350_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18746..20068
DNA (1323bp) protein (441aa)
beta alanine--pyruvate transaminase; K00822 beta-alanine--pyruvate transaminase [EC:2.6.1.18]
Aminotransferase class-III n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPR8_PARL1
Aminotransferase class-III {ECO:0000313|EMBL:ABS61901.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_350_curated_19
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20075..21238)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=T0B1F7_9RHOO
small-conductance mechanosensitive channel
Tax=BJP_IG2103_Rhodocyclales_63_50
scnpilot_solids2_trim150_scaffold_350_curated_20
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21341..23209)
DNA (1869bp) protein (623aa)
Ferrous iron transport protein B n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SWV6_CAUSK
ferrous iron transport protein B; K04759 ferrous iron transport protein B
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
scnpilot_solids2_trim150_scaffold_350_curated_21
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23206..23484)
DNA (279bp) protein (93aa)
Fe2+ transport system protein A n=1 Tax=Caulobacter crescentus OR37 RepID=R0D3T6_CAUCE
Fe2+ transport system protein A {ECO:0000313|EMBL:ENZ83085.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
FeoA family protein; K04758 ferrous iron transport protein A
scnpilot_solids2_trim150_scaffold_350_curated_22
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23631..24548
DNA (918bp) protein (306aa)
Methylase/methyltransferase id=4876749 bin=GWA2_OP3_52_12 species=Limnobacter sp. MED105 genus=Limnobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
Methylase/methyltransferase {ECO:0000313|EMBL:EDM82566.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
type 11 methyltransferase
scnpilot_solids2_trim150_scaffold_350_curated_23
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24606..25643
DNA (1038bp) protein (346aa)
pyridoxal-5'-phosphate-dependent protein subunit beta; K01738 cysteine synthase A [EC:2.5.1.47]
Pyridoxal-5'-phosphate-dependent protein beta subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6C9_9BRAD
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:EFI51876.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
scnpilot_solids2_trim150_scaffold_350_curated_24
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25640..26485
DNA (846bp) protein (282aa)
rhodanese domain-containing protein; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
Rhodanese domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXG3_PARL1
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_350_curated_25
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26492..27013
DNA (522bp) protein (174aa)
GCN5-related N-acetyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXG2_PARL1
Acetyltransferase, GNAT family {ECO:0000313|EMBL:CDO61260.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
N-acetyltransferase GCN5
scnpilot_solids2_trim150_scaffold_350_curated_26
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27187..28629
DNA (1443bp) protein (481aa)
Amino acid/peptide transporter n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QH03_NITHX
amino acid/peptide transporter
Amino acid/peptide transporter {ECO:0000313|EMBL:ABE64494.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_350_curated_27
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28681..30375)
DNA (1695bp) protein (565aa)
peptidyl-dipeptidase A (EC:3.4.15.1); K01283 peptidyl-dipeptidase A [EC:3.4.15.1]
Peptidyl-dipeptidase A {ECO:0000313|EMBL:ABZ69321.1}; EC=3.4.15.1 {ECO:0000313|EMBL:ABZ69321.1};; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
Peptidyl-dipeptidase A n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T386_CAUSK
scnpilot_solids2_trim150_scaffold_350_curated_28
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30606..31769
DNA (1164bp) protein (388aa)
cystathionine beta-lyase; K01760 cystathionine beta-lyase [EC:4.4.1.8]
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036F527B
Cystathionine beta-lyase {ECO:0000313|EMBL:EWY41770.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
scnpilot_solids2_trim150_scaffold_350_curated_29
Acetobacter sp. CAG:977, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31766..32110
DNA (345bp) protein (115aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00103216};; TaxID=1262685 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; environmental samples.;" source="Acetobacter sp. CAG:977.;"
phosphoribosyl-ATP diphosphatase; K11755 phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase [EC:3.6.1.31 3.5.4.19]
Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Acetobacter sp. CAG:977 RepID=R5QKN8_9PROT
scnpilot_solids2_trim150_scaffold_350_curated_30
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32107..33417)
DNA (1311bp) protein (437aa)
FAD-linked oxidoreductase {ECO:0000313|EMBL:ABS64588.1}; EC=1.1.3.8 {ECO:0000313|EMBL:ABS64588.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
FAD-linked oxidoreductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXF5_PARL1
FAD-linked oxidoreductase
Displaying items 1-30 of 250 in total

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