ggKbase home page

scnpilot_solids2_trim150_scaffold_359_curated_25

Organism: solids_Alphaproteobacteria_1

near complete RP 50 / 55 BSCG 49 / 51 MC: 3 ASCG 11 / 38
Location: comp(21873..24419)

Top 3 Functional Annotations

Value Algorithm Source
ligand-gated channel n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B33FAB similarity UNIREF
DB: UNIREF100
  • Identity: 48.0
  • Coverage: 818.0
  • Bit_score: 715
  • Evalue 6.60e-203
TonB-dependent receptor {ECO:0000313|EMBL:CCW16489.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.4
  • Coverage: 850.0
  • Bit_score: 690
  • Evalue 4.10e-195
TonB-dependent receptor similarity KEGG
DB: KEGG
  • Identity: 47.0
  • Coverage: 858.0
  • Bit_score: 666
  • Evalue 1.10e-188

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Sphingobium japonicum → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2547
ATGCCATGGATTTCGAGCTGTCTGCGCGGCAACAGCATGAAGATGAGCCGTTTTCTACTTGCATCCGCCGTCGGCACGTTTTTGTTTGCTGATATTTCGGCGGCTTACGCGCAAATCGAGACCGTTGTCGTCACCGCGCGCAAGCGGGCCGAGAATGTTCAGAACGTTCCCGTTGCGGTCACCGCGCTGAGCGGCGAAAAACTCGAGCAATACAACATCACCAGCATCGAAAAAGTGGCAGCCCAGACACCGCAATTGGTGGTCGCCCGCGGCAGTAGCGGCAGCGGCGCGGATATCAGCCTGCGCGGCATCGGTTCTTCTTCGGAAAATATCGGTATCGAGCAATCGGTGGCCGTCAATGTCGATGGCGTCTATCTGGGGCAGGGACGCGCCATCAATGAAGGCTTGTTCGACCTGAAGCAGGTCGAAGTGCTGCGCGGGCCGCAGGCACTTTATTTCGGCAAGAACGCGACGGCCGGGGTGATCTCGCTCGAATCGGCCGATCCGACCGACCAGTTCGAGGCGATGGCGCGCGTCGGTTACGAATTCCACGCGCAGAATGCCTATCTGGAAGGTTATGTCTCGGGTCCGGTCACCGACACGCTGGGTCTGCGCCTTGCCGTCCGGGGCAGCAATATGTTCGGCGGCTATTTCACCAACGAAGCGGTTGGCGGCCTGTCCTATACGACATTTGATGCTGCGACCGGTGCCACGAATGTGCATCCCACCACCGCACCTTCGCCGCGCAATCTGCCGCTGGAGAAGGATGGGTTGGTACGGCTGACCGCCAAGTGGGCGCCGACCGACGAATTTACGATGACGTTGAAACTGACTGGGGACGTTTACAAGACGGCCAACAATGTTTCCAATTCGGTATCCGTCAATTGCCCGCTTGGGCATCCGCAGCTTGATCCGGCCGAAACCTGCGGCAAGCAATGGAAATTGTGGGCCAACAATATTCCGGCGGATATCGCCGCCAGTGATCCGCTCCTGAGCCGTAAGGGTGGAAAGCCGTTTGAGGACTACCGATCTTATACGGCCATTCTCAATGCGCAGTATGTAACGCCGAAGCTGACGTTGTCATCGGTTTCGGGCTACCAGACCCTCTACAATGACTGGGCGGGGGATCAGGACTTTACGGGTACACCGGCGGTTTATGCCGGGGAGCATTTTACCTGGCGTCAATTCTCGACCGAAGAACGCGTTCTGACGACATTCGATTTCCCGGTGAATTTCAGCGGCGGTCTCTACTATCAATCGACGCGGCTCAACTTCAACCAGGATGTGCTGTTCGCCTCGGCGCAGAACAGCGCGGTTACCGATCCGTCTGCGGAATATGTTGCTTACAGGAAATTGTCAGCGACAAACGGCACCACTTACGCCGCGTTTGGCCAGATCATCGTGGATATTCTGCCGACTTTGCAGGGAACTGCGGGCGGCCGTTATACGCACGAAATCAAAAGCTCATTCTTCCGGCAACCCTATGTCAATCCGCTGCTCACGTCGATTTTTGTGCCGGATGACAGCCTGACTGCGCCCTTCCCGGTCATCACCGCGCATCAGAGCTTCGACAATTTCTCGCCGGAGTTCATGCTGACATGGCGGCCGCAGGAGAATTTGACGATCTATGGCGGATGGAAGCGCGGCTTCAAGTCTGGCGGCTTCTCCAACAGTGCCATCAACAGCACATTGGGTATCCCAAGCGATCTCATCTTCCGGCCTGAAAAGGCACAAGGTGTCGAAGGCGGCGTGAAATCGACCTGGTTCGATCATCAGCTTCAGGTTAATCTCGATATCTACGATTATCTTTATACTGACCTTCAGGTCGACTTCTTCAACACACCGACCTTCAACTACACCACGCTGAACGCGGCGTCGGCGCGCACCAAGGGTATCGAGTTTGAGACGCAGTATGCGCCGGACTGGATCAAGGGGCTGCTGCTCCGTGGCACGCTTGCCTACAATGATGCGCATTACAGCAACTTCATCGCGCCGTGCTCGCCCGCCGGTATGAGCTATCAGCAGGGGTGTAATCTGCTGCGCGTTGTCGATAACATCGCGACCGGTGCCTATCACTTCACGCCGGATTGCGGTGGCACGCTGGCCTTCCCGACCGGGTGCAATTTCTTTGATGCGAGCGGCCGGCCAACCTCGCTGGCGCCACGATGGACGGCCTCTTTCGAAGCCGATTATTCCACGCCGATCGGCATGGGCCTGATCATGAGCATGTCCGGCAATCTGCGCTACAGCAGCTCTTATCTGACCTCCGGCTTCCCAAGTGATGTGAATCTGGCTGTGGCGCGGCAGAGCGCATATGCCGCCTTCGATGCAACCCTGCGCGTGGGCGACGAAGCCAATCATTGGGAAGTGGCTTTGATCGGGAAAAATCTGACCAATGCCTTCGTCAATGTCGGCACGGCAGGGTTGCCGCTCTCGGGTGCGGGGACCGGTTTGCAGGCCGGCTCCCCAGGCCAGATTATCTCCGATCAGGGCGGCATCATTCTCGATCCGCGCACGGTCGCACTTCAGCTCACCTATCGTTATTGA
PROTEIN sequence
Length: 849
MPWISSCLRGNSMKMSRFLLASAVGTFLFADISAAYAQIETVVVTARKRAENVQNVPVAVTALSGEKLEQYNITSIEKVAAQTPQLVVARGSSGSGADISLRGIGSSSENIGIEQSVAVNVDGVYLGQGRAINEGLFDLKQVEVLRGPQALYFGKNATAGVISLESADPTDQFEAMARVGYEFHAQNAYLEGYVSGPVTDTLGLRLAVRGSNMFGGYFTNEAVGGLSYTTFDAATGATNVHPTTAPSPRNLPLEKDGLVRLTAKWAPTDEFTMTLKLTGDVYKTANNVSNSVSVNCPLGHPQLDPAETCGKQWKLWANNIPADIAASDPLLSRKGGKPFEDYRSYTAILNAQYVTPKLTLSSVSGYQTLYNDWAGDQDFTGTPAVYAGEHFTWRQFSTEERVLTTFDFPVNFSGGLYYQSTRLNFNQDVLFASAQNSAVTDPSAEYVAYRKLSATNGTTYAAFGQIIVDILPTLQGTAGGRYTHEIKSSFFRQPYVNPLLTSIFVPDDSLTAPFPVITAHQSFDNFSPEFMLTWRPQENLTIYGGWKRGFKSGGFSNSAINSTLGIPSDLIFRPEKAQGVEGGVKSTWFDHQLQVNLDIYDYLYTDLQVDFFNTPTFNYTTLNAASARTKGIEFETQYAPDWIKGLLLRGTLAYNDAHYSNFIAPCSPAGMSYQQGCNLLRVVDNIATGAYHFTPDCGGTLAFPTGCNFFDASGRPTSLAPRWTASFEADYSTPIGMGLIMSMSGNLRYSSSYLTSGFPSDVNLAVARQSAYAAFDATLRVGDEANHWEVALIGKNLTNAFVNVGTAGLPLSGAGTGLQAGSPGQIISDQGGIILDPRTVALQLTYRY*