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scnpilot_solids2_trim150_scaffold_359_curated

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_359_curated_1
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..585
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K3Z6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EPR11224.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_359_curated_2
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(570..2411)
DNA (1842bp) protein (614aa)
Putative chloride channel protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HWW1_BORPD
chloride channel protein
Putative chloride channel protein {ECO:0000313|EMBL:CAP43663.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
scnpilot_solids2_trim150_scaffold_359_curated_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

2522..2950
DNA (429bp) protein (143aa)
MarR family transcriptional regulator n=1 Tax=mine drainage metagenome RepID=T0YIX4_9ZZZZ
Transcriptional regulator {ECO:0000313|EMBL:CDM65072.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
MarR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_359_curated_4
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

2969..3343
DNA (375bp) protein (125aa)
Putative uncharacterized protein n=1 Tax=Rheinheimera sp. A13L RepID=F7NUU6_9GAMM
Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
scnpilot_solids2_trim150_scaffold_359_curated_5
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3382..3834)
DNA (453bp) protein (151aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
scnpilot_solids2_trim150_scaffold_359_curated_6
bacterium YEK0313, Bacteria

Not on your lists

comp(4103..4561)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003800175
HTH-type transcriptional repressor NsrR {ECO:0000313|EMBL:CEJ11669.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
scnpilot_solids2_trim150_scaffold_359_curated_7
Acetobacter indonesiensis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4701..5129
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S2Z8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAN62039.1}; TaxID=1231340 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter indonesiensis 5H-1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_359_curated_8
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5274..6464
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003090250
Uncharacterized protein {ECO:0000313|EMBL:KEO90607.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
putative iron-sulfur protein
scnpilot_solids2_trim150_scaffold_359_curated_9
alpha proteobacterium IMCC14465, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6607..7146)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium IMCC14465 RepID=J9DZK6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EJW21129.1}; TaxID=1220535 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium IMCC14465.;"
snoaL-like domain-containing protein
scnpilot_solids2_trim150_scaffold_359_curated_10
marine actinobacterium MedAcidi-G1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7281..8621
DNA (1341bp) protein (447aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002E17FC2
Iron-sulfur protein {ECO:0000313|EMBL:KIE49874.1}; TaxID=1550399 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G1.;"
putative iron-sulfur protein
scnpilot_solids2_trim150_scaffold_359_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8632..9378)
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00037A4D55
Putative TetR family transcriptional regulator {ECO:0000313|EMBL:GAD50016.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
TetR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_359_curated_12
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9510..10292
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Mastigocladopsis repens RepID=UPI0002F98572
Short-chain dehydrogenase {ECO:0000313|EMBL:ETX03901.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
short-chain dehydrogenase
scnpilot_solids2_trim150_scaffold_359_curated_13
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10419..10757)
DNA (339bp) protein (113aa)
UPI0003D01F87 related cluster n=1 Tax=unknown RepID=UPI0003D01F87
Uncharacterized protein {ECO:0000313|EMBL:KEO90627.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
antibiotic biosynthesis monooxygenase
scnpilot_solids2_trim150_scaffold_359_curated_14
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10754..11167)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00035EC7FC
hypothetical protein
SnoaL-like domain protein {ECO:0000313|EMBL:KHS43864.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
scnpilot_solids2_trim150_scaffold_359_curated_15
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11183..12193)
DNA (1011bp) protein (337aa)
NADP-dependent oxidoreductase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B376E0
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
scnpilot_solids2_trim150_scaffold_359_curated_16
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12389..12928)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI000368A69A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL24603.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
scnpilot_solids2_trim150_scaffold_359_curated_17
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12940..13950)
DNA (1011bp) protein (337aa)
pyruvate dehydrogenase E1 component subunit beta; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component beta subunit n=1 Tax=Gluconacetobacter xylinus (strain NBRC 3288 / BCRC 11682 / LMG 1693) RepID=G2I3K7_GLUXN
Pyruvate dehydrogenase {ECO:0000313|EMBL:KEO92359.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
scnpilot_solids2_trim150_scaffold_359_curated_18
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13965..14930)
DNA (966bp) protein (322aa)
acoA; acetoin:DCPIP oxidoreductase subunit alpha; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
Acetoin dehydrogenase complex, E1 protein, alpha subunit n=2 Tax=Pelobacter carbinolicus RepID=Q3A7P1_PELCD
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEO92360.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
scnpilot_solids2_trim150_scaffold_359_curated_19
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14947..15705)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0Q1L0_9RHOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL24604.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
scnpilot_solids2_trim150_scaffold_359_curated_20
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15718..16479)
DNA (762bp) protein (254aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RT78_9GAMM
Oxidoreductase, short chain dehydrogenase/reductase family {ECO:0000313|EMBL:EEB80176.1}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2148.;"
scnpilot_solids2_trim150_scaffold_359_curated_21
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16588..17382
DNA (795bp) protein (265aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Azoarcus sp. KH32C RepID=H0Q1K8_9RHOO
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:BAL24602.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
scnpilot_solids2_trim150_scaffold_359_curated_22
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17543..18946)
DNA (1404bp) protein (468aa)
(2Fe-2S)-binding protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B75F13
(2Fe-2S)-binding protein {ECO:0000313|EMBL:KHK89901.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
Rieske (2Fe-2S) domain-containing protein
scnpilot_solids2_trim150_scaffold_359_curated_23
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19177..20289)
DNA (1113bp) protein (371aa)
branched-chain alpha-keto acid dehydrogenase subunit E2; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Alpha/beta hydrolase fold n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IBQ5_BEII9
Acetoin dehydrogenase {ECO:0000313|EMBL:KGM34641.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
scnpilot_solids2_trim150_scaffold_359_curated_24
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20537..21793)
DNA (1257bp) protein (419aa)
(2Fe-2S)-binding protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6A92F
Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:EEB78747.1}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2148.;"
Rieske (2Fe-2S) domain-containing protein
scnpilot_solids2_trim150_scaffold_359_curated_25
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21873..24419)
DNA (2547bp) protein (849aa)
ligand-gated channel n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B33FAB
TonB-dependent receptor {ECO:0000313|EMBL:CCW16489.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
TonB-dependent receptor
scnpilot_solids2_trim150_scaffold_359_curated_26
gamma proteobacterium IMCC3088, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24634..25827)
DNA (1194bp) protein (398aa)
Major facilitator superfamily MFS_1 n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3L4E8_9GAMM
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EGG28784.1}; TaxID=876044 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="gamma proteobacterium IMCC3088.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_359_curated_27
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25923..26774)
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002FAF518
Enoyl-CoA hydratase {ECO:0000313|EMBL:ETR77002.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
enoyl-CoA hydratase/isomerase
scnpilot_solids2_trim150_scaffold_359_curated_28
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26857..27813)
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B58A05
Uncharacterized protein {ECO:0000313|EMBL:KEO90609.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_359_curated_29
unknown

Not on your lists

comp(27827..28147)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B3D341
scnpilot_solids2_trim150_scaffold_359_curated_30
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28194..28514)
DNA (321bp) protein (107aa)
Rieske (2Fe-2S) domain protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V8J4_SPHWW
Rieske (2Fe-2S) domain-containing protein; K05710 dioxygenase ferredoxin subunit
Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:ABQ68610.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Displaying items 1-30 of 48 in total

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