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scnpilot_solids2_trim150_scaffold_1392_curated_16

Organism: solids_Alphaproteobacteria_1

near complete RP 50 / 55 BSCG 49 / 51 MC: 3 ASCG 11 / 38
Location: 15353..16378

Top 3 Functional Annotations

Value Algorithm Source
RluA family pseudouridine synthase; K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] similarity KEGG
DB: KEGG
  • Identity: 58.8
  • Coverage: 318.0
  • Bit_score: 359
  • Evalue 1.20e-96
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.8
  • Coverage: 318.0
  • Bit_score: 359
  • Evalue 5.20e-96
Pseudouridine synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWU2_PARL1 similarity UNIREF
DB: UNIREF100
  • Identity: 58.8
  • Coverage: 318.0
  • Bit_score: 359
  • Evalue 3.70e-96

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Taxonomy

Parvibaculum lavamentivorans → Parvibaculum → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1026
ATGAACGGCCCGAAAGACAGAACTGCAACCGTTGCGGCGGATGATGACGGCATCCGGCTGGACCGCTGGTTCCGCCGCCACCATCCCGCGCTGGGGCATGGCGCGCTGGAGAAGCTGCTGCGCACGGGCTGGGTCCGCCTCGATGGTAAGCGCGCCAAGGCCGGTGACCGGATCGCAGCGGGGCAGGTCGTCCGCCTGCCGCCGCCGGCCCTGCTCTCAGGCGCGGAAAAGGCGCAACCCGAAACTGCCGCCCCGAAACCCGCCCGCACCGCCATGGACGGCAGCCGGCTGAAGGACCTCATCCTGTATCAGGACGATCTGGTGATCGTGCTGAACAAGCCCTCCGGTCTCGCGACCCAGGGTGGTTCCGGCCTGACCCAGCATATCGACGGTATGCTCGACGCCCTGATGTTCGAGCGCAAACAGCGCCCCCGTCTGGTCCATCGGCTGGATCGCGATACCTCCGGCGTTCTCGTCATCGCGCGCACGCCATCGGCGGCGGCGGCGTTGGCGGAATCGCTACGCCATCGCGATGCCTCGAAAATCTATTGGGCGCTGACCCGCGGCGTGCCGCAGAAGCCGCGCGGCACCATCCGCCTCGCCCTCGCGAAAGAGGGTGGGCACGGCCCGCATGGCCGCGACGAGCGCATGGTGGCAAAGGATGCGGGGGAGGATGCCAAACGCGCCGTCACCGATTATGCGGTGATCGATCGCGCCGCTGCGGATTTCGCCTGGGTGGCCGCCAAGCCGGTGACGGGCCGTACCCATCAGATCCGTGTCCATCTGGCGGAACTGGGCACACCGATTGTCGGCGATTTCAAATATGGTGGAACCGATGCACGCCCGCGCGGTGAGATCGAGGATCGGCTGCATCTGCATGCGCGTTCCATCGACATTGCGCACCCTTCAGGTGGCCGCCTCAGGGTGACGGCGCCGCTGCCGCCGCATATGATGCACACATGGAGCTTGCTCGGCTTCGATCCCGATCTGCAAACCAACCCGTTTGGCGCCGCACGAACCCGATGA
PROTEIN sequence
Length: 342
MNGPKDRTATVAADDDGIRLDRWFRRHHPALGHGALEKLLRTGWVRLDGKRAKAGDRIAAGQVVRLPPPALLSGAEKAQPETAAPKPARTAMDGSRLKDLILYQDDLVIVLNKPSGLATQGGSGLTQHIDGMLDALMFERKQRPRLVHRLDRDTSGVLVIARTPSAAAALAESLRHRDASKIYWALTRGVPQKPRGTIRLALAKEGGHGPHGRDERMVAKDAGEDAKRAVTDYAVIDRAAADFAWVAAKPVTGRTHQIRVHLAELGTPIVGDFKYGGTDARPRGEIEDRLHLHARSIDIAHPSGGRLRVTAPLPPHMMHTWSLLGFDPDLQTNPFGAARTR*