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scnpilot_solids2_trim150_scaffold_1392_curated

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1392_curated_1
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..461
DNA (459bp) protein (153aa)
preprotein translocase subunit SecY n=1 Tax=Elioraea tepidiphila RepID=UPI00035D8802
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
scnpilot_solids2_trim150_scaffold_1392_curated_2
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

458..1027
DNA (570bp) protein (190aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W9U8_9CAUL
scnpilot_solids2_trim150_scaffold_1392_curated_3
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1045..3006)
DNA (1962bp) protein (654aa)
Putative transcriptional regulator n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R7X2_PHEZH
transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
scnpilot_solids2_trim150_scaffold_1392_curated_4
unknown

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3254..3586
DNA (333bp) protein (111aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1392_curated_5
unknown

Not on your lists

comp(4445..4798)
DNA (354bp) protein (118aa)
Uncharacterized protein {ECO:0000313|EMBL:CPR17991.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
scnpilot_solids2_trim150_scaffold_1392_curated_6
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5612..7261)
DNA (1650bp) protein (550aa)
amidohydrolase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A3F0
amidohydrolase 3
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
scnpilot_solids2_trim150_scaffold_1392_curated_7
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists


7697..8074
DNA (378bp) protein (126aa)
30S ribosomal protein S13 n=1 Tax=Ponticaulis koreensis RepID=UPI0003B4AD58
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
scnpilot_solids2_trim150_scaffold_1392_curated_8
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8076..8471
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=4 Tax=Rhodospirillaceae RepID=RS11_MAGSA
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1316936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
scnpilot_solids2_trim150_scaffold_1392_curated_9
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8564..9580
DNA (1017bp) protein (339aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RPOA_PARL1
scnpilot_solids2_trim150_scaffold_1392_curated_10
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9580..10005
DNA (426bp) protein (142aa)
50S ribosomal protein L17 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=RL17_METS4
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
scnpilot_solids2_trim150_scaffold_1392_curated_11
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10095..11504
DNA (1410bp) protein (470aa)
degP; periplasmic serine protease, Do (EC:3.4.21.-); K01362 [EC:3.4.21.-]
Periplasmic serine protease, Do n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y210_9PROT
Protease Do {ECO:0000313|EMBL:GAK46404.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
scnpilot_solids2_trim150_scaffold_1392_curated_12
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11627..12940
DNA (1314bp) protein (438aa)
AAA ATPase central domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWU0_PARL1
recombination factor protein RarA; K07478 putative ATPase
AAA ATPase central domain protein {ECO:0000313|EMBL:ABS64373.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_1392_curated_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12966..14309)
DNA (1344bp) protein (448aa)
gdh; NADP-specific glutamate dehydrogenase Gdh (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
glutamate dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI0002DE7498
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
scnpilot_solids2_trim150_scaffold_1392_curated_14
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14468..14809)
DNA (342bp) protein (114aa)
Bll2637 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89RX5_BRADU
hypothetical protein; K09137 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAR59706.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
scnpilot_solids2_trim150_scaffold_1392_curated_15
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(14812..15210)
DNA (399bp) protein (133aa)
Putative fluoride ion transporter CrcB n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=CRCB_OPITP
camphor resistance protein CrcB; K06199 CrcB protein
Putative fluoride ion transporter CrcB {ECO:0000255|HAMAP-Rule:MF_00454}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
scnpilot_solids2_trim150_scaffold_1392_curated_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15353..16378
DNA (1026bp) protein (342aa)
RluA family pseudouridine synthase; K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Pseudouridine synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWU2_PARL1
scnpilot_solids2_trim150_scaffold_1392_curated_17
Bacteriovorax sp. BSW11_IV, Bacteriovorax, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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16375..17418
DNA (1044bp) protein (348aa)
Cupin domain protein n=1 Tax=Bacteriovorax sp. BSW11_IV RepID=T0T4T3_9DELT
Cupin domain protein {ECO:0000313|EMBL:EQC50217.1}; TaxID=1353529 species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bacteriovoracaceae; Bacteriovorax.;" source="Bacteriovorax sp. BSW11_IV.;"
hemolysin
scnpilot_solids2_trim150_scaffold_1392_curated_18
Loktanella cinnabarina, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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17415..18113
DNA (699bp) protein (233aa)
Chaperone required for the assembly of the mitochondrial F1-ATPase n=1 Tax=Loktanella cinnabarina LL-001 RepID=U3AKD5_9RHOB
Chaperone required for the assembly of the mitochondrial F1-ATPase {ECO:0000313|EMBL:GAD55228.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-001.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1392_curated_19
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18192..19970
DNA (1779bp) protein (593aa)
carboxyl transferase domain; K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3]
Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta) n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWE7_9RHIZ
Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta) {ECO:0000313|EMBL:EIM28289.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
scnpilot_solids2_trim150_scaffold_1392_curated_20
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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20742..21695
DNA (954bp) protein (318aa)
K+ channel, voltage-gated ion channel (VIC) family n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F1A9_ACIC5
K+ channel, voltage-gated ion channel (VIC) family; K10716 voltage-gated potassium channel
K+ channel, voltage-gated ion channel (VIC) family {ECO:0000313|EMBL:ACO31904.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
scnpilot_solids2_trim150_scaffold_1392_curated_21
Pseudomonas sp. GM55, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21832..22398
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM55 RepID=J3GYQ0_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EJM79117.1}; TaxID=1144333 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM55.;"
peptidoglycan-binding domain-containing protein
scnpilot_solids2_trim150_scaffold_1392_curated_22
Rivularia sp. PCC 7116, Rivularia, Nostocales, Cyanobacteria, Bacteria

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comp(22406..22798)
DNA (393bp) protein (131aa)
PREDICTED: ribonuclease UK114-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C12071
putative translation initiation inhibitor, yjgF family
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:AFY56903.1}; Flags: Precursor;; TaxID=373994 species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Rivularia.;" source="Rivularia sp. PCC 7116.;"
scnpilot_solids2_trim150_scaffold_1392_curated_23
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22864..24567
DNA (1704bp) protein (568aa)
M28 family peptidase (EC:3.4.-.-); K01423 [EC:3.4.-.-]
Peptidase, family M28 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C0F6_HYPNA
Peptidase M28 {ECO:0000313|EMBL:KJS26519.1}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c29.;"
scnpilot_solids2_trim150_scaffold_1392_curated_24
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24634..25893
DNA (1260bp) protein (420aa)
membrane protein n=1 Tax=Rhizobium giardinii RepID=UPI00038068BB
hypothetical protein
Uncharacterized protein aq_1828 {ECO:0000313|EMBL:CCE96101.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
scnpilot_solids2_trim150_scaffold_1392_curated_25
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25976..28000
DNA (2025bp) protein (675aa)
carbamoyl-phosphate synthase L chain ATP-binding; K01965 propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
Carbamoyl-phosphate synthase L chain ATP-binding n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWU7_PARL1
Carbamoyl-phosphate synthase L chain ATP-binding {ECO:0000313|EMBL:ABS64380.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_1392_curated_26
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(28001..29416)
DNA (1416bp) protein (472aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036A2C42
Uncharacterized protein {ECO:0000313|EMBL:KDP73462.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
peptidase S41
scnpilot_solids2_trim150_scaffold_1392_curated_27
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29479..29766
DNA (288bp) protein (96aa)
Acylphosphatase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TNU6_TISMK
acyP; acylphosphatase
Acylphosphatase {ECO:0000313|EMBL:AFK54434.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
scnpilot_solids2_trim150_scaffold_1392_curated_28
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(29779..30168)
DNA (390bp) protein (130aa)
Conserved hypothetical signal peptide protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T414_CAUSK
putative signal peptide protein
Conserved hypothetical signal peptide protein {ECO:0000313|EMBL:ABZ73898.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
scnpilot_solids2_trim150_scaffold_1392_curated_29
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30312..31010)
DNA (699bp) protein (233aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
lipoate-protein ligase B; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181]
Octanoyltransferase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IMR1_XANP2
scnpilot_solids2_trim150_scaffold_1392_curated_30
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31021..31257
DNA (237bp) protein (79aa)
flagellar motor switch protein fliN n=1 Tax=Hirschia maritima RepID=UPI00036B2879
Surface presentation of antigens (SPOA) protein {ECO:0000313|EMBL:GAK46393.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Surface presentation of antigen (SpoA) domain-containing protein; K02417 flagellar motor switch protein FliN/FliY
Displaying items 1-30 of 34 in total

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