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scnpilot_solids2_trim150_scaffold_744_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_744_curated_1
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

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comp(2..2059)
DNA (2058bp) protein (686aa)
hypothetical protein n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B71C41
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
scnpilot_solids2_trim150_scaffold_744_curated_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2281..3225
DNA (945bp) protein (315aa)
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUX5_CHIPD
scnpilot_solids2_trim150_scaffold_744_curated_3
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

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3284..3991
DNA (708bp) protein (236aa)
Putative uncharacterized protein id=1872055 bin=GWD2_Bacteroidetes_40_43 species=Odoribacter laneus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
hypothetical protein
Tax=GWE2_Bacteroidetes_40_63_curated
scnpilot_solids2_trim150_scaffold_744_curated_4
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4120..5535
DNA (1416bp) protein (472aa)
tRNA nucleotidyltransferase/poly(A) polymerase (EC:2.7.7.19)
tRNA nucleotidyltransferase/poly(A) polymerase family protein n=3 Tax=root RepID=A5ZLD9_9BACE
tRNA nucleotidyltransferase/poly(A) polymerase family protein {ECO:0000313|EMBL:CCZ71840.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
scnpilot_solids2_trim150_scaffold_744_curated_5
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(5537..6055)
DNA (519bp) protein (173aa)
Acetyltransferase, GNAT family n=1 Tax=Indibacter alkaliphilus LW1 RepID=S2E079_9BACT
acetyltransferase
Tax=RBG_16_Ignavibacteria_34_14_curated
scnpilot_solids2_trim150_scaffold_744_curated_6
CG_Flavo_02, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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6334..6678
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Polaribacter franzmannii RepID=UPI00037408A5
Tax=CG_Flavo_02
scnpilot_solids2_trim150_scaffold_744_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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6726..7313
DNA (588bp) protein (196aa)
Scaffold protein Nfu/NifU n=1 Tax=Niabella soli DSM 19437 RepID=H1NRT1_9SPHI
Thioredoxin {ECO:0000313|EMBL:AHF16030.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Scaffold protein Nfu/NifU
scnpilot_solids2_trim150_scaffold_744_curated_8
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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7379..8863
DNA (1485bp) protein (495aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalb
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GU98_9SPHI
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
scnpilot_solids2_trim150_scaffold_744_curated_9
Treponema primitia, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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8915..9403
DNA (489bp) protein (163aa)
CMP/dCMP deaminase zinc-binding protein; K01493 dCMP deaminase [EC:3.5.4.12]
CMP/dCMP deaminase, zinc-binding protein n=1 Tax=Treponema primitia (strain ATCC BAA-887 / DSM 12427 / ZAS-2) RepID=F5YH27_TREPZ
CMP/dCMP deaminase, zinc-binding protein {ECO:0000313|EMBL:AEF84941.1}; TaxID=545694 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema primitia (strain ATCC BAA-887 / DSM 12427 / ZAS-2).;"
scnpilot_solids2_trim150_scaffold_744_curated_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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9406..9708
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBP7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV98179.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_744_curated_11
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

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comp(9727..10563)
DNA (837bp) protein (279aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L893_HALH1
filamentation induced by cAMP protein fic
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
scnpilot_solids2_trim150_scaffold_744_curated_12
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(10612..10803)
DNA (192bp) protein (64aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L893_HALH1
cell division protein Fic
Fic family protein {ECO:0000313|EMBL:GAO29918.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
scnpilot_solids2_trim150_scaffold_744_curated_13
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(10998..11843)
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI00038067B5
hypothetical protein
Tax=RBG_13_RIF_OD1_08_37_53_curated
scnpilot_solids2_trim150_scaffold_744_curated_14
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11943..12659)
DNA (717bp) protein (239aa)
BclB domain-containing protein n=1 Tax=Bacillus cereus BAG3X2-2 RepID=J7YA72_BACCE
BclB domain-containing protein {ECO:0000313|EMBL:EJQ21171.1}; TaxID=1053184 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus BAG3X2-2.;"
exosporium protein
scnpilot_solids2_trim150_scaffold_744_curated_15
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

comp(12656..12787)
DNA (132bp) protein (44aa)
Uncharacterized protein n=1 Tax=Psychroflexus gondwanensis ACAM 44 RepID=N1WLK1_9FLAO
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
scnpilot_solids2_trim150_scaffold_744_curated_16
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13377..14276)
DNA (900bp) protein (300aa)
Virulence protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KU45_SOLCM
virulence protein
Virulence protein {ECO:0000313|EMBL:AFD07025.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_solids2_trim150_scaffold_744_curated_17
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14676..16172
DNA (1497bp) protein (499aa)
GH3 auxin-responsive promoter n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S7G6_PEDSD
GH3 auxin-responsive promoter
GH3 auxin-responsive promoter {ECO:0000313|EMBL:ADY51191.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
scnpilot_solids2_trim150_scaffold_744_curated_18
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16390..16938)
DNA (549bp) protein (183aa)
Membrane-associated phospholipid phosphatase n=1 Tax=Pedobacter sp. BAL39 RepID=A6EGT8_9SPHI
Membrane-associated phospholipid phosphatase {ECO:0000313|EMBL:EDM35250.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
membrane-associated phospholipid phosphatase
scnpilot_solids2_trim150_scaffold_744_curated_19
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16949..19846)
DNA (2898bp) protein (966aa)
Peptidase, M16 family protein id=4108793 bin=GWF2_Bacteroidetes_33_38 species=Kordia algicida genus=Kordia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
peptidase, M16 family protein
Tax=GWA2_Bacteroidetes_31_9_curated
scnpilot_solids2_trim150_scaffold_744_curated_20
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

20007..21968
DNA (1962bp) protein (654aa)
ppic-type peptidyL-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
PpiC-type peptidyl-prolyl cis-trans isomerase id=2124787 bin=GWE2_Bacteroidetes_29_8 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_29_8 organism_group=Bacteroidetes organism_desc=Good
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
scnpilot_solids2_trim150_scaffold_744_curated_21
RBG_13_Bacteroidetes_46_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21985..22908
DNA (924bp) protein (308aa)
Putative uncharacterized protein id=4586799 bin=GWF2_Bacteroidetes_49_14 species=Cesiribacter andamanensis genus=Cesiribacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
hypothetical protein
Tax=RBG_13_Bacteroidetes_46_8_curated
scnpilot_solids2_trim150_scaffold_744_curated_22
unknown

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22865..23482
DNA (618bp) protein (206aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_744_curated_23
BJP_08E140C01_Bacteriodales_41_10, Bacteriodales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23662..24840
DNA (1179bp) protein (393aa)
Cell surface adhesin with VCBS protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LFI8_9BACT
PKD domain-containing protein
Tax=BJP_08E140C01_Bacteriodales_41_10
scnpilot_solids2_trim150_scaffold_744_curated_24
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

Not on your lists

25029..26987
DNA (1959bp) protein (653aa)
Conserved repeat domain protein n=1 Tax=Krokinobacter sp. (strain 4H-3-7-5) RepID=F4AXI6_KROS4
conserved repeat domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
Displaying 24 items

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