ggKbase home page

scnpilot_solids2_trim150_scaffold_1113_curated

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1113_curated_1
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1..588
DNA (588bp) protein (196aa)
Acyl-CoA dehydrogenase, long-chain specific {ECO:0000313|EMBL:EAY31687.1}; EC=1.3.8.8 {ECO:0000313|EMBL:EAY31687.1};; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
Acyl-CoA dehydrogenase, long-chain specific n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZDE8_9BACT
acyl-CoA dehydrogenase
scnpilot_solids2_trim150_scaffold_1113_curated_2
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

602..1114
DNA (513bp) protein (171aa)
dihydrofolate reductase (EC:1.5.1.3); K00287 dihydrofolate reductase [EC:1.5.1.3]
Dihydrofolate reductase id=2794947 bin=GWC2_Bacteroidetes_33_15 species=Pontibacter sp. BAB1700 genus=Pontibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_33_15 organism_group=Bacteroidetes organism_desc=Good +
Tax=GWD2_Bacteroidetes_33_33_curated
scnpilot_solids2_trim150_scaffold_1113_curated_3
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1118..1333)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CII9_9FLAO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJL72131.1}; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
scnpilot_solids2_trim150_scaffold_1113_curated_4
unknown

Not on your lists

1398..1976
DNA (579bp) protein (193aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1113_curated_5
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

Not on your lists

1995..3116
DNA (1122bp) protein (374aa)
DNA protecting protein DprA id=4125603 bin=GWF2_Bacteroidetes_41_31 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
DNA protecting protein DprA; K04096 DNA processing protein
Tax=BJP_IG2103_Bacteroidetes_37_22
scnpilot_solids2_trim150_scaffold_1113_curated_6
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3134..3994)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KN05_SOLCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFD09084.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_solids2_trim150_scaffold_1113_curated_7
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(4289..4642)
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C6X7_SPHS2
50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
scnpilot_solids2_trim150_scaffold_1113_curated_8
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(4685..5242)
DNA (558bp) protein (186aa)
50S ribosomal protein L6 n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2J7B2_9SPHI
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
scnpilot_solids2_trim150_scaffold_1113_curated_9
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(5279..5683)
DNA (405bp) protein (135aa)
30S ribosomal protein S8 n=1 Tax=Lewinella cohaerens RepID=UPI000362165A
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
scnpilot_solids2_trim150_scaffold_1113_curated_10
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(5713..5982)
DNA (270bp) protein (90aa)
30S ribosomal protein S14 n=1 Tax=Flexithrix dorotheae RepID=UPI0003735B78
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
scnpilot_solids2_trim150_scaffold_1113_curated_11
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(5995..6549)
DNA (555bp) protein (185aa)
50S ribosomal protein L5 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU83_CHIPD
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_1113_curated_12
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

comp(6735..7466)
DNA (732bp) protein (244aa)
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
scnpilot_solids2_trim150_scaffold_1113_curated_13
Draconibacterium orientale, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7568..7888)
DNA (321bp) protein (107aa)
Thioredoxin n=2 Tax=Sphingobacterium spiritivorum RepID=C2G473_9SPHI
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1168034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium orientale.;"
thioredoxin; K03671 thioredoxin 1
scnpilot_solids2_trim150_scaffold_1113_curated_14
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

Not on your lists

comp(7969..9051)
DNA (1083bp) protein (361aa)
ilvE; branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
Branched-chain-amino-acid aminotransferase n=1 Tax=Saprospira grandis (strain Lewin) RepID=H6L476_SAPGL
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
scnpilot_solids2_trim150_scaffold_1113_curated_15
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9191..9931)
DNA (741bp) protein (247aa)
RNA methyltransferase, TrmH family id=1856608 bin=GWD2_Bacteroidetes_33_33 species=Bacteroides coprocola genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
tRNA/rRNA methyltransferase (SpoU); K03437 RNA methyltransferase, TrmH family
Tax=GWD2_Bacteroidetes_33_33_curated
scnpilot_solids2_trim150_scaffold_1113_curated_16
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

10028..12301
DNA (2274bp) protein (758aa)
Putative uncharacterized protein n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FVH6_9FLAO
Surface antigen (D15) {ECO:0000313|EMBL:KIA83985.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
outer membrane protein/protective antigen OMA87
scnpilot_solids2_trim150_scaffold_1113_curated_17
Cesiribacter andamanensis, Cesiribacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

12385..13656
DNA (1272bp) protein (424aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1279009 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Cesiribacter.;" source="Cesiribacter andamanensis AMV16.;"
glyA; serine hydroxymethyltransferase; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1]
Serine hydroxymethyltransferase n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7NAP8_9BACT
scnpilot_solids2_trim150_scaffold_1113_curated_18
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13767..14879
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2TTG5_9DELT
Uncharacterized protein {ECO:0000313|EMBL:AKF86271.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
scnpilot_solids2_trim150_scaffold_1113_curated_19
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14887..15705)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IET0_FLUTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA45647.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_solids2_trim150_scaffold_1113_curated_20
Formosa sp. AK20, Formosa, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15724..16734)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Formosa sp. AK20 RepID=M7MM81_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EMQ96010.1}; TaxID=1137281 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Formosa.;" source="Formosa sp. AK20.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1113_curated_21
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16964..18001
DNA (1038bp) protein (346aa)
Taurine catabolism dioxygenase TauD, TfdA family n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08V96_STIAD
Taurine catabolism dioxygenase TauD/TfdA
Taurine catabolism dioxygenase TauD/TfdA {ECO:0000313|EMBL:ADO73287.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
scnpilot_solids2_trim150_scaffold_1113_curated_22
Algibacter lectus, Algibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18005..18898
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI00036ECFAF
Na(+) dependent transporter {ECO:0000313|EMBL:GAL64045.1}; TaxID=221126 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Algibacter.;" source="Algibacter lectus.;"
bile acid:sodium symporter; K03453 bile acid:Na+ symporter, BASS family
scnpilot_solids2_trim150_scaffold_1113_curated_23
Saprospira grandis, Saprospira, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18903..19505)
DNA (603bp) protein (201aa)
Glycosyl transferase family 2 n=1 Tax=Saprospira grandis (strain Lewin) RepID=H6L8E2_SAPGL
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:AFC26506.1}; TaxID=984262 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Saprospira.;" source="Saprospira grandis (strain Lewin).;"
Displaying 23 items

View Taxonomy