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scnpilot_solids2_trim150_scaffold_107_curated_81

Organism: solids_Bacteroidetes_1

near complete RP 49 / 55 BSCG 46 / 51 ASCG 13 / 38 MC: 1
Location: comp(97611..98204)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EQ98_EMTOG similarity UNIREF
DB: UNIREF100
  • Identity: 52.8
  • Coverage: 180.0
  • Bit_score: 189
  • Evalue 3.80e-45
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:AHJ96125.1}; TaxID=1227739 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 51.6
  • Coverage: 184.0
  • Bit_score: 192
  • Evalue 6.30e-46
RNA polymerase, sigma-24 subunit, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 52.8
  • Coverage: 180.0
  • Bit_score: 189
  • Evalue 1.20e-45

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Taxonomy

Hymenobacter swuensis → Hymenobacter → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 594
ATGAAGGACACTACTTTAACCTTATCACTCAGCATGGCTGAGATACAAGACGAATTACTTCGGAATACTTTTAATAAAGAGAAGCAACGCCTTTTTCATTTCATAAAAAAGCGCGTTCCAAGCACTGAAGATGCAGAAGATGTACTTCAAGATGTATTTTATGAACTCATAAATTCTTATAGAATGATGAAACCTGTGGAGCAAGTAGCTTCATGGATGTTTACAGTTGCGCGCAATAAAATTACCGATCGCTTTCGCAAGAAAAAACCTGAAAGTTTAGAAGGTTATTTTTCGCGTAAAGAAGTTGATGGCGAGCGTTTAGATATTGGTGATTTTTTACCTGCAAACGGCACTTCTGCCGATAGAGAAATGATGCGTAAAGTAATTTCAGATGCATTGATGACAGCATTGGAAGAGTTGCCCCAAGAACAAAGAGATGTTTTTGTAATGCACGAATTTGAAGACAAAAGTTTTAATGAAATTGCAGAGATTACCGGAGTATCGCTCAATACTTTACTGAGCAGAAAAAGATATGCCGTTGTACACCTTCGCAAGCGTTTACAGCATTTATATAACGATGTTTTTACTAACTAA
PROTEIN sequence
Length: 198
MKDTTLTLSLSMAEIQDELLRNTFNKEKQRLFHFIKKRVPSTEDAEDVLQDVFYELINSYRMMKPVEQVASWMFTVARNKITDRFRKKKPESLEGYFSRKEVDGERLDIGDFLPANGTSADREMMRKVISDALMTALEELPQEQRDVFVMHEFEDKSFNEIAEITGVSLNTLLSRKRYAVVHLRKRLQHLYNDVFTN*