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scnpilot_solids2_trim150_scaffold_2051_curated_12

Organism: solids_Bacteroidetes_1

near complete RP 49 / 55 BSCG 46 / 51 ASCG 13 / 38 MC: 1
Location: 10460..11317

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KTJ4_HALH1 similarity UNIREF
DB: UNIREF100
  • Identity: 55.2
  • Coverage: 288.0
  • Bit_score: 311
  • Evalue 7.40e-82
RNA polymerase sigma factor rpoD {ECO:0000313|EMBL:KIF27009.1}; TaxID=1574475 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Aphanocapsa.;" source="Aphanocapsa montana BDHKU210001.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.0
  • Coverage: 289.0
  • Bit_score: 314
  • Evalue 1.20e-82
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 55.2
  • Coverage: 288.0
  • Bit_score: 311
  • Evalue 2.30e-82

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Taxonomy

Aphanocapsa montana → Aphanocapsa → Chroococcales → Oscillatoriophycideae → Cyanobacteria → Bacteria

Sequences

DNA sequence
Length: 858
ATGAAAGCACTAAAACTTACTAACCAAATTACCCAGCGCGATAGTGAGTGCGTAGAAAAGTATTTGTCAGAAATTGGCAAAAGCGATATTCTCACGCCTCAACAAGAAGCAGATTTAGCCCAGCGAATTAAAGAAGACGATTTAGACGCATTAGAAACCTTAGTAAATTCCAACCTTAGGTTTGTGGTAAGCGTTGCGAAACAATATCAAAATCAAGGATTGCCGCTAAGCGATTTAATAAATGAGGGCAACTTAGGCTTAATTCGGGCAGCCAAAAAATTTGACGAAACCAAAGGTTTTAAATTTATATCGTATGCCGTTTGGTGGATTAGGCAAGCAATAATGCAAGCTATAATTGAGCAATCGCGCATCATTCGAGTTCCGATAAATAAAGTGGGAACATTCACAAAAATCAATCGTGCTTTTCAGTCGTTTGAGCAGCAATACCAACGCGAACCAAGCATTGATGAACTTGCTGAACATGTTGGCATGAGCAAAGATGATGTGAATGATTATTTTAATAATAACATGCCTACGGTTTCTACAGATTCTAGATTTTCCGAGGGATCCAGTTTGGCGGAAACACTTTCTAACAGCGAAGATATGACTCCCGAACAGAGTTATATTAAGAAAAGCGCTGAGGCAGAATTGTTTTCACTTTTTGCACACTTAAACGAGCGCGAAGTGGAAGTGCTTACCAATTATTTCGGGCTGAATGGAAAAGAGCCAAAAACATTGGAGGAAATTGGTCAGCAATATGGCTTAACCCGCGAAAGGGTACGCCAAATTAAAGAGCGCTCCATGCAAAAACTTAAACAACATACTAATCCAAATTTATTGGACTCCCTTTTGGGGTAA
PROTEIN sequence
Length: 286
MKALKLTNQITQRDSECVEKYLSEIGKSDILTPQQEADLAQRIKEDDLDALETLVNSNLRFVVSVAKQYQNQGLPLSDLINEGNLGLIRAAKKFDETKGFKFISYAVWWIRQAIMQAIIEQSRIIRVPINKVGTFTKINRAFQSFEQQYQREPSIDELAEHVGMSKDDVNDYFNNNMPTVSTDSRFSEGSSLAETLSNSEDMTPEQSYIKKSAEAELFSLFAHLNEREVEVLTNYFGLNGKEPKTLEEIGQQYGLTRERVRQIKERSMQKLKQHTNPNLLDSLLG*