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scnpilot_solids2_trim150_scaffold_2051_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2051_curated_1
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(91..888)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI000346C614
ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AHJ96502.1}; TaxID=1227739 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;"
Fe3+-hydroxamate ABC transporter substrate-binding protein
scnpilot_solids2_trim150_scaffold_2051_curated_2
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(901..1971)
DNA (1071bp) protein (357aa)
DNA polymerase III, delta subunit n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KUL5_SOLCM
DNA polymerase III subunit delta {ECO:0000313|EMBL:KHJ38843.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
DNA polymerase III subunit delta
scnpilot_solids2_trim150_scaffold_2051_curated_3
unknown

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comp(1983..2432)
DNA (450bp) protein (150aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2051_curated_4
Mucispirillum schaedleri, Mucispirillum, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

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comp(2498..3274)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Mucispirillum schaedleri ASF457 RepID=V2RGX3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ESJ96953.1}; TaxID=1379858 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Mucispirillum.;" source="Mucispirillum schaedleri ASF457.;"
short-chain alcohol dehydrogenase
scnpilot_solids2_trim150_scaffold_2051_curated_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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3340..3930
DNA (591bp) protein (197aa)
Translation initiation factor IF-3 n=1 Tax=Niabella soli DSM 19437 RepID=H1NL56_9SPHI
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
translation initiation factor IF-3; K02520 translation initiation factor IF-3
scnpilot_solids2_trim150_scaffold_2051_curated_6
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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4066..4665
DNA (600bp) protein (200aa)
Regulatory protein TetR n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EL95_RUNSL
TetR family transcriptional regulator
Regulatory protein TetR {ECO:0000313|EMBL:AEI51864.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_solids2_trim150_scaffold_2051_curated_7
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4670..5674)
DNA (1005bp) protein (335aa)
Acyl-CoA reductase (LuxC) n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KV29_SOLCM
Acyl-CoA reductase (LuxC)
Acyl-CoA reductase (LuxC) {ECO:0000313|EMBL:AFD06029.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_solids2_trim150_scaffold_2051_curated_8
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5791..6822)
DNA (1032bp) protein (344aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
dihydroorotate dehydrogenase (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Pontibacter sp. BAB1700 RepID=J0LC18_9BACT
scnpilot_solids2_trim150_scaffold_2051_curated_9
unknown

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comp(6825..7928)
DNA (1104bp) protein (368aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2051_curated_10
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(7906..9159)
DNA (1254bp) protein (418aa)
three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HSB5_9SPHI
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
scnpilot_solids2_trim150_scaffold_2051_curated_11
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(9162..10313)
DNA (1152bp) protein (384aa)
cysteine desulfurase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7]
Cysteine desulfurase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EEK8_RUNSL
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
scnpilot_solids2_trim150_scaffold_2051_curated_12
Aphanocapsa montana, Aphanocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

10460..11317
DNA (858bp) protein (286aa)
RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KTJ4_HALH1
RNA polymerase sigma factor rpoD {ECO:0000313|EMBL:KIF27009.1}; TaxID=1574475 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Aphanocapsa.;" source="Aphanocapsa montana BDHKU210001.;"
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor
scnpilot_solids2_trim150_scaffold_2051_curated_13
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

comp(11429..11599)
DNA (171bp) protein (57aa)
Conserved repeat domain protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S5P7_PEDSD
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
Displaying 13 items

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