ggKbase home page

scnpilot_solids2_trim150_scaffold_20_curated_138

Organism: solids_Bacteroidetes_1

near complete RP 49 / 55 BSCG 46 / 51 ASCG 13 / 38 MC: 1
Location: comp(153970..154617)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niabella soli DSM 19437 RepID=H1NM26_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 61.9
  • Coverage: 215.0
  • Bit_score: 284
  • Evalue 7.30e-74
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KGO09917.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.2
  • Coverage: 215.0
  • Bit_score: 295
  • Evalue 5.80e-77
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 41.7
  • Coverage: 216.0
  • Bit_score: 168
  • Evalue 2.40e-39

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Elizabethkingia miricola → Elizabethkingia → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 648
ATGATTCAAGTAGAAAGTAATTCTGAAGTTGAACTATTAGAAAGAATAATTTCTGGTGATAAGGCACTATATGAAATAGTAGTTCGGAGATACAATCCATTCTTGTATAAGATTGGCCGCTCGTATAACTACGACCACGAAGACACGCAAGACCTTATGCAAGAAACTTTTATTGATGCTTACAAAAGCTTATCGAAATTTGAAAATCGCGCAAGTTTTAAAACGTGGATATTCAGAATTATGTTGAATAACTGCCATCGAAAAAGTCAAAAATTAAGTTTTAAAAATGAACTTTCAAAAGAAATAAAAGAAGATTCAAAGCCCATGTTTTCAAACTCAAAAAATAGTGCAGATGCTATGGTTCACAAACGCGAAGTAGCACATGTGATAGAGGCAGCCCTATCAAAAATTCCGGAAGAATACAGAATGGTTTTCTCGCTTAGGGAAATAAACGAGTTGAGCACTGCTGAAACTGCTGAGCTTTTAAATATTACAGAAACAAATGTGAAGGTTCGTTTAAATAGAGCCAAAACAATGCTTAGAAACGAAATTGAAAAGAATTACACCGCTAAAGAGCTTTACGAATTCAACTTAATTTATTGCAATGCAATAGTGAGTAATGTGATGCAAAAGATAAATGAACTTTAA
PROTEIN sequence
Length: 216
MIQVESNSEVELLERIISGDKALYEIVVRRYNPFLYKIGRSYNYDHEDTQDLMQETFIDAYKSLSKFENRASFKTWIFRIMLNNCHRKSQKLSFKNELSKEIKEDSKPMFSNSKNSADAMVHKREVAHVIEAALSKIPEEYRMVFSLREINELSTAETAELLNITETNVKVRLNRAKTMLRNEIEKNYTAKELYEFNLIYCNAIVSNVMQKINEL*