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scnpilot_solids2_trim150_scaffold_20_curated

Search features with annotation key words

Displaying items 121-150 of 219 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_20_curated_121
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

comp(135188..137419)
DNA (2232bp) protein (744aa)
Putative uncharacterized protein id=3590358 bin=GWF2_Ignavibacteria_33_9 species=Alloprevotella rava genus=Alloprevotella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
peptidase S8/S53 subtilisin kexin sedolisin
Tax=GWF2_RIF_IGX_33_9_curated
scnpilot_solids2_trim150_scaffold_20_curated_122
unknown

Not on your lists

comp(137507..138310)
DNA (804bp) protein (268aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_20_curated_123
R_OP11_Curtissbacteria_41_44, Curtissbacteria, Microgenomates, Bacteria

Not on your lists

comp(138404..139714)
DNA (1311bp) protein (437aa)
Probable ABC-type polysaccharide/polyol phosphate transport system, ATPase component id=1955005 bin=GWA2_Polynucleobacter_45_21 species=Flavobacterium branchiophilum genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Polynucleobacter_45_21 organism_group=Betaproteobacteria
ABC transporter; K09691 lipopolysaccharide transport system ATP-binding protein
Tax=RIFCSPHIGHO2_01_FULL_OP11_Curtissbacteria_41_44_curated
scnpilot_solids2_trim150_scaffold_20_curated_124
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(139711..140535)
DNA (825bp) protein (275aa)
ABC-2 type transporter id=4439658 bin=GWF2_Bacteroidetes_35_48 species=Marivirga tractuosa genus=Marivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
ABC-2 type transporter; K09690 lipopolysaccharide transport system permease protein
Tax=GWF2_Bacteroidetes_35_48_curated
scnpilot_solids2_trim150_scaffold_20_curated_125
Capnocytophaga sp. oral taxon 863, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(140873..141232)
DNA (360bp) protein (120aa)
DNA-binding helix-turn-helix protein n=1 Tax=Capnocytophaga sp. oral taxon 863 str. F0517 RepID=U2C7Y8_9FLAO
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERI63501.1}; TaxID=1227266 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga sp. oral taxon 863 str. F0517.;"
scnpilot_solids2_trim150_scaffold_20_curated_126
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

141288..142370
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IGP7_FLUTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA43664.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_solids2_trim150_scaffold_20_curated_127
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

142415..145273
DNA (2859bp) protein (953aa)
Putative uncharacterized protein id=2603544 bin=GWF2_Bacteroidetes_33_38 species=Spirosoma linguale genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
Collagen triple helix repeat-containing protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_solids2_trim150_scaffold_20_curated_128
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

145416..146780
DNA (1365bp) protein (455aa)
glutamate dehydrogenase (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
Glutamate dehydrogenase n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XS85_PEDHD
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
scnpilot_solids2_trim150_scaffold_20_curated_129
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

146818..147447
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002F7FEB0
Crp/Fnr family transcriptional regulator; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:AEA44997.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_solids2_trim150_scaffold_20_curated_130
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(147458..147946)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L3I0_HALH1
hypothetical protein; K09776 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE52957.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
scnpilot_solids2_trim150_scaffold_20_curated_131
Phaeodactylibacter xiamenensis, Phaeodactylibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

148167..148427
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZL84_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KGE89769.1}; TaxID=1524460 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Phaeodactylibacter.;" source="Phaeodactylibacter xiamenensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_20_curated_132
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

148454..149083
DNA (630bp) protein (210aa)
cytochrome c oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
hypothetical protein n=1 Tax=Lewinella persica RepID=UPI000376500F
Cytochrome c oxidase subunit III {ECO:0000313|EMBL:AEE48687.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
scnpilot_solids2_trim150_scaffold_20_curated_133
CG_Bacteroid_01, Bacteroidetes, Bacteria

Not on your lists

comp(149086..151194)
DNA (2109bp) protein (703aa)
Uncharacterized protein id=4430083 bin=GWF2_Bacteroidetes_29_10 species=Saprospira grandis genus=Saprospira taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_29_10 organism_group=Bacteroidetes
hypothetical protein
Tax=CG_Bacteroid_01
scnpilot_solids2_trim150_scaffold_20_curated_134
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(151286..151840)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Capnocytophaga sp. oral taxon 336 str. F0502 RepID=S3BJV3_9FLAO
Iron-sulfur cluster assembly protein HesB {ECO:0000313|EMBL:GAL86001.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_20_curated_135
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(151837..152532)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NM28_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:GAL86002.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_20_curated_136
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(152625..153293)
DNA (669bp) protein (223aa)
Flavodoxin reductase family protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KMM7_SOLCM
flavodoxin reductase family protein
Flavodoxin reductase family protein {ECO:0000313|EMBL:AFD09018.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_solids2_trim150_scaffold_20_curated_137
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(153308..153946)
DNA (639bp) protein (213aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
GTP cyclohydrolase I; K01495 GTP cyclohydrolase I [EC:3.5.4.16]
GTP cyclohydrolase I n=1 Tax=Niabella aurantiaca RepID=UPI000365B716
scnpilot_solids2_trim150_scaffold_20_curated_138
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(153970..154617)
DNA (648bp) protein (216aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niabella soli DSM 19437 RepID=H1NM26_9SPHI
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KGO09917.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
sigma-70 family RNA polymerase sigma factor
scnpilot_solids2_trim150_scaffold_20_curated_139
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(154816..155181)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S4Z6_PEDSD
hypothetical protein; K06886 hemoglobin
Uncharacterized protein {ECO:0000313|EMBL:ADY54170.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
scnpilot_solids2_trim150_scaffold_20_curated_140
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(155413..155898)
DNA (486bp) protein (162aa)
Cytochrome c class I n=1 Tax=Niabella soli DSM 19437 RepID=H1NNF5_9SPHI
Cytochrome C {ECO:0000313|EMBL:AHF15290.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
cytochrome c class I
scnpilot_solids2_trim150_scaffold_20_curated_141
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(155982..159113)
DNA (3132bp) protein (1044aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IB29_FLUTR
Putative RND-type efflux pump membrane protein {ECO:0000313|EMBL:GAO43834.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
CzcA family heavy metal efflux pump; K15726 cobalt-zinc-cadmium resistance protein CzcA
scnpilot_solids2_trim150_scaffold_20_curated_142
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(159125..160216)
DNA (1092bp) protein (364aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S6R9_PEDSD
Putative RND-type efflux pump membrane fusion protein {ECO:0000313|EMBL:GAO43835.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
RND family efflux transporter MFP subunit; K15727 cobalt-zinc-cadmium resistance protein CzcB
scnpilot_solids2_trim150_scaffold_20_curated_143
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(160219..161469)
DNA (1251bp) protein (417aa)
Outer membrane efflux protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IB27_FLUTR
outer membrane efflux protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
Outer membrane efflux protein {ECO:0000313|EMBL:AEA42110.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_solids2_trim150_scaffold_20_curated_144
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(161539..162903)
DNA (1365bp) protein (455aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IB26_FLUTR
integral membrane sensor signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_20_curated_145
Schleiferia thermophila, Schleiferia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(162910..163581)
DNA (672bp) protein (224aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IB25_FLUTR
Transcriptional regulator {ECO:0000313|EMBL:KFD40030.1}; TaxID=1453500 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Schleiferiaceae; Schleiferia.;" source="Schleiferia thermophila str. Yellowstone.;"
winged helix family two component transcriptional regulator
scnpilot_solids2_trim150_scaffold_20_curated_146
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(163622..164206)
DNA (585bp) protein (195aa)
Contig58, whole genome shotgun sequence {ECO:0000313|EMBL:KIO76640.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
scnpilot_solids2_trim150_scaffold_20_curated_147
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

164438..165124
DNA (687bp) protein (229aa)
HAD-superfamily hydrolase, subfamily IA, variant 1 n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W6H0_DYAFD
HAD superfamily hydrolase
HAD-superfamily hydrolase, subfamily IA, variant 1 {ECO:0000313|EMBL:ACT94310.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_solids2_trim150_scaffold_20_curated_148
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

165250..165927
DNA (678bp) protein (226aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4AK45_FLELS
Winged helix family two component transcriptional regulator {ECO:0000313|EMBL:GAL83650.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
scnpilot_solids2_trim150_scaffold_20_curated_149
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

165924..167204
DNA (1281bp) protein (427aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
Signal transduction histidine kinase n=1 Tax=Joostella marina DSM 19592 RepID=I3CA57_9FLAO
signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_20_curated_150
Flavobacterium suncheonense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

167301..167750
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CF10_SPHS2
Uncharacterized protein {ECO:0000313|EMBL:KGO87181.1}; TaxID=1121899 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium suncheonense GH29-5 = DSM 17707.;"
hypothetical protein
Displaying items 121-150 of 219 in total

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