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scnpilot_solids2_trim150_scaffold_112_curated

Search features with annotation key words

Displaying items 61-90 of 245 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_112_curated_61
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66818..67615)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003820347
GntR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
scnpilot_solids2_trim150_scaffold_112_curated_62
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67741..68868)
DNA (1128bp) protein (376aa)
mandelate racemase/muconate lactonizing enzyme (EC:5.1.-.-)
Putative mandelate racemase/muconate lactonizing enzyme {ECO:0000313|EMBL:CAP43245.1}; EC=5.1.-.- {ECO:0000313|EMBL:CAP43245.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003724332
scnpilot_solids2_trim150_scaffold_112_curated_63
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68897..69736)
DNA (840bp) protein (280aa)
binding-protein-dependent transport systems inner membrane component n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002628EDF
ABC transporter permease {ECO:0000313|EMBL:AHF87952.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein
scnpilot_solids2_trim150_scaffold_112_curated_64
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69733..70629)
DNA (897bp) protein (299aa)
binding-protein-dependent transport systems inner membrane component n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002628EE0
ABC transporter permease {ECO:0000313|EMBL:KKB08918.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
binding-protein-dependent transport systems inner membrane component
scnpilot_solids2_trim150_scaffold_112_curated_65
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70729..72012)
DNA (1284bp) protein (428aa)
ABC transporter substrate-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000376FF50
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB08917.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
extracellular solute-binding protein family 1; K02027 multiple sugar transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_112_curated_66
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72219..73190
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGT4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAR51851.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
amidohydrolase 2; K07046
scnpilot_solids2_trim150_scaffold_112_curated_67
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73242..74096
DNA (855bp) protein (285aa)
Dehydrogenase n=1 Tax=Burkholderia dolosa AUO158 RepID=A2WE57_9BURK
Dehydrogenase {ECO:0000313|EMBL:CDX43676.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
short-chain dehydrogenase/reductase SDR
scnpilot_solids2_trim150_scaffold_112_curated_68
unknown

Not on your lists

comp(74097..74282)
DNA (186bp) protein (62aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_112_curated_69
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74391..74681
DNA (291bp) protein (97aa)
membrane protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003638970
Membrane protein {ECO:0000313|EMBL:EXL05937.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein; K02221 YggT family protein
scnpilot_solids2_trim150_scaffold_112_curated_70
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74690..75730
DNA (1041bp) protein (347aa)
DNA polymerase III, delta subunit n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KFQ2_MESAW
DNA polymerase III, delta subunit
DNA polymerase III, delta subunit {ECO:0000313|EMBL:AGB43345.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
scnpilot_solids2_trim150_scaffold_112_curated_71
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75948..76481)
DNA (534bp) protein (178aa)
UPI0003D04A51 related cluster n=1 Tax=unknown RepID=UPI0003D04A51
Fatty acid hydroxylase {ECO:0000313|EMBL:ESZ30010.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
fatty acid hydroxylase
scnpilot_solids2_trim150_scaffold_112_curated_72
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76604..77476)
DNA (873bp) protein (291aa)
chromosome partitioning protein ParB n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D63692
ParB-like partition protein {ECO:0000313|EMBL:EHH07162.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
ParB-like partition protein
scnpilot_solids2_trim150_scaffold_112_curated_73
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77502..78299)
DNA (798bp) protein (266aa)
chromosome partitioning protein ParA n=1 Tax=Rhizobium loti RepID=UPI00035CDEAB
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:AID33441.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
chromosome partitioning protein, ParA; K03496 chromosome partitioning protein
scnpilot_solids2_trim150_scaffold_112_curated_74
unknown

Not on your lists

78331..78918
DNA (588bp) protein (196aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_112_curated_75
Mesorhizobium sp. L2C089B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(78963..80735)
DNA (1773bp) protein (591aa)
tRNA uridine 5-carboxymethylaminomethyl modification protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F05293
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1287120 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C089B000.;"
glucose inhibited division protein A; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme
scnpilot_solids2_trim150_scaffold_112_curated_76
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80978..82300)
DNA (1323bp) protein (441aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
small GTP-binding protein; K03650 tRNA modification GTPase [EC:3.6.-.-]
PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C196D5
scnpilot_solids2_trim150_scaffold_112_curated_77
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82344..84362
DNA (2019bp) protein (673aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003629DC8
Uncharacterized protein {ECO:0000313|EMBL:CDX62971.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
thioredoxin domain protein
scnpilot_solids2_trim150_scaffold_112_curated_78
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84359..85624)
DNA (1266bp) protein (422aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884, ECO:0000313|EMBL:ABG64845.1}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
transcription termination factor Rho n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D8F3AB
rho; transcription termination factor Rho; K03628 transcription termination factor Rho
scnpilot_solids2_trim150_scaffold_112_curated_79
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85771..86319)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2ME33_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF19025.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
TIGR00701 family protein
scnpilot_solids2_trim150_scaffold_112_curated_80
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86316..87302)
DNA (987bp) protein (329aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hemE; uroporphyrinogen decarboxylase; K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37]
Uroporphyrinogen decarboxylase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LMK7_9RHIZ
scnpilot_solids2_trim150_scaffold_112_curated_81
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87741..88562
DNA (822bp) protein (274aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
PEP synthetase regulatory protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000302EE34
hypothetical protein; K09773 hypothetical protein
scnpilot_solids2_trim150_scaffold_112_curated_82
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88595..89194
DNA (600bp) protein (200aa)
Maf-like protein NA2_09578 n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MP18_9RHIZ
Maf-like protein NA2_09578 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
Maf family protein; K06287 septum formation protein
scnpilot_solids2_trim150_scaffold_112_curated_83
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89187..90032
DNA (846bp) protein (282aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|SAAS:SAAS00228653}; EC=1.1.1.- {ECO:0000256|SAAS:SAAS00275099};; EC=1.1.1.25 {ECO:0000256|SAAS:SAAS00216361};; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
Shikimate 5-dehydrogenase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BWP7_9RHIZ
shikimate 5-dehydrogenase
scnpilot_solids2_trim150_scaffold_112_curated_84
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

90029..90646
DNA (618bp) protein (206aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24]
dephospho-CoA kinase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036BCBBD
scnpilot_solids2_trim150_scaffold_112_curated_85
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

90682..91380
DNA (699bp) protein (233aa)
DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
DNA polymerase III subunit epsilon n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LMK3_9RHIZ
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:EKF19019.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
scnpilot_solids2_trim150_scaffold_112_curated_86
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91400..92008)
DNA (609bp) protein (203aa)
Protein-export protein SecB n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=SECB_MESSB
preprotein translocase subunit SecB; K03071 preprotein translocase subunit SecB
Protein-export protein SecB {ECO:0000255|HAMAP-Rule:MF_00821}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
scnpilot_solids2_trim150_scaffold_112_curated_87
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92046..92600)
DNA (555bp) protein (185aa)
Protein affecting phage T7 exclusion by the F plasmid n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VIS2_9RHIZ
Protein affecting phage T7 exclusion by the F plasmid {ECO:0000313|EMBL:EJM99899.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
protein affecting phage T7 exclusion by the F plasmid
scnpilot_solids2_trim150_scaffold_112_curated_88
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92707..93405
DNA (699bp) protein (233aa)
Import inner membrane translocase subunit Tim44 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKX1_9RHIZ
Import inner membrane translocase subunit Tim44 {ECO:0000313|EMBL:EHK58615.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_112_curated_89
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

93540..94646
DNA (1107bp) protein (369aa)
outer membrane lipoprotein GNA33, membrane-bound lytic murein transglycosylase; K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-]
UPI0003CF164B related cluster n=1 Tax=unknown RepID=UPI0003CF164B
Transglycosylase {ECO:0000313|EMBL:ESY76731.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
scnpilot_solids2_trim150_scaffold_112_curated_90
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94643..95194
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BWN8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM73990.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
Smr protein/MutS2
Displaying items 61-90 of 245 in total

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