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scnpilot_solids2_trim150_scaffold_112_curated

Search features with annotation key words

Displaying items 1-30 of 245 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_112_curated_1
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..244
DNA (243bp) protein (81aa)
Hydantoinase A n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I905_AZOC5
hydantoinase A
Hydantoinase A {ECO:0000313|EMBL:BAF88726.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
scnpilot_solids2_trim150_scaffold_112_curated_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(851..1381)
DNA (531bp) protein (177aa)
Putative cytochrome b561 n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0STC2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG06645.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
cytochrome B561
scnpilot_solids2_trim150_scaffold_112_curated_3
Mesorhizobium sp. LNJC399B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1719..2495
DNA (777bp) protein (259aa)
Uncharacterized protein n=5 Tax=Mesorhizobium RepID=V7EXE1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX99754.1}; TaxID=1287277 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC399B00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_112_curated_4
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2590..3300)
DNA (711bp) protein (237aa)
DeoR faimly transcriptional regulator n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030C2A89
Transcriptional regulator(Repressor protein) {ECO:0000313|EMBL:EHK58245.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Helix-turn-helix type 11 domain-containing protein
scnpilot_solids2_trim150_scaffold_112_curated_5
Mesorhizobium sp. LSHC426A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3450..3629)
DNA (180bp) protein (60aa)
Uncharacterized protein n=5 Tax=Mesorhizobium RepID=V7EX66_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX47049.1}; TaxID=1287298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC426A00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_112_curated_6
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3718..4506)
DNA (789bp) protein (263aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HM57_9RHIZ
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:KFB08687.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
short-chain dehydrogenase/reductase SDR
scnpilot_solids2_trim150_scaffold_112_curated_7
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4656..6557)
DNA (1902bp) protein (634aa)
AMP-dependent synthetase and ligase; K01908 propionyl-CoA synthetase [EC:6.2.1.17]
UPI0003CEDE1C related cluster n=1 Tax=unknown RepID=UPI0003CEDE1C
Acyl-CoA synthetase {ECO:0000313|EMBL:ESY65058.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
scnpilot_solids2_trim150_scaffold_112_curated_8
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6683..6901
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036EFB73
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58255.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_112_curated_9
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7044..8054)
DNA (1011bp) protein (337aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
glyceraldehyde-3-phosphate dehydrogenase; K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E5164D
scnpilot_solids2_trim150_scaffold_112_curated_10
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8126..10114)
DNA (1989bp) protein (663aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
Transketolase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KHB3_MESAW
transketolase
scnpilot_solids2_trim150_scaffold_112_curated_11
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10360..10632
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000373204C
hypothetical protein
Msl3747 protein {ECO:0000313|EMBL:BAB50572.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
scnpilot_solids2_trim150_scaffold_112_curated_12
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10642..11007
DNA (366bp) protein (122aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HM75_9RHIZ
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein; K09888 cell division protein ZapA
scnpilot_solids2_trim150_scaffold_112_curated_13
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11269..11793)
DNA (525bp) protein (175aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLC0_9RHIZ
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:EHK58449.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ErfK/YbiS/YcfS/YnhG family protein
scnpilot_solids2_trim150_scaffold_112_curated_14
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11949..12632
DNA (684bp) protein (228aa)
Two component transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2NZR0_9RHIZ
Two component transcriptional regulator {ECO:0000313|EMBL:EKF40541.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
scnpilot_solids2_trim150_scaffold_112_curated_15
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12783..13241
DNA (459bp) protein (153aa)
cAMP-dependent protein kinase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037B5EE0
cAMP-dependent protein kinase {ECO:0000313|EMBL:ERM02232.1}; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
cyclic nucleotide-binding protein
scnpilot_solids2_trim150_scaffold_112_curated_16
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13256..14062)
DNA (807bp) protein (269aa)
Exodeoxyribonuclease III n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLB7_9RHIZ
Exodeoxyribonuclease III {ECO:0000313|EMBL:EHK58446.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
exodeoxyribonuclease III Xth
scnpilot_solids2_trim150_scaffold_112_curated_17
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14176..14847)
DNA (672bp) protein (224aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLB6_9RHIZ
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
outer membrane lipoprotein carrier protein LolA
scnpilot_solids2_trim150_scaffold_112_curated_18
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14996..17620)
DNA (2625bp) protein (875aa)
cell division protein FtsK n=1 Tax=Hoeflea sp. 108 RepID=UPI0003729B5D
DNA translocase FtsK {ECO:0000313|EMBL:CDX25907.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
DNA segregation ATPase, FtsK/SpoIIIE family
scnpilot_solids2_trim150_scaffold_112_curated_19
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17923..18168
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZFV9_METPB
Signal peptide protein {ECO:0000313|EMBL:EZQ16366.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_112_curated_20
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18360..19154)
DNA (795bp) protein (265aa)
Uncharacterized protein n=3 Tax=Ochrobactrum intermedium RepID=M5JPA8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EEQ94546.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_112_curated_21
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19349..20653)
DNA (1305bp) protein (435aa)
UPI0003CE7092 related cluster n=1 Tax=unknown RepID=UPI0003CE7092
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ammonium transporter; K03320 ammonium transporter, Amt family
scnpilot_solids2_trim150_scaffold_112_curated_22
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20905..21783)
DNA (879bp) protein (293aa)
Acyl-CoA thioesterase II n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LMX4_9RHIZ
Acyl-CoA thioesterase II {ECO:0000313|EMBL:EKF19119.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
acyl-CoA thioesterase II
scnpilot_solids2_trim150_scaffold_112_curated_23
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21890..23146
DNA (1257bp) protein (419aa)
2-octaprenyl-6-methoxyphenyl hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11DB4_MESSB
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family {ECO:0000313|EMBL:ABG64611.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
scnpilot_solids2_trim150_scaffold_112_curated_24
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23484..24377)
DNA (894bp) protein (298aa)
Fructose-1,6-bisphosphate aldolase {ECO:0000313|EMBL:EHK58257.1}; EC=4.1.2.13 {ECO:0000313|EMBL:EHK58257.1};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
fructose-bisphosphate aldolase; K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
PREDICTED: fructose-bisphosphate aldolase, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C18683
scnpilot_solids2_trim150_scaffold_112_curated_25
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24699..25892)
DNA (1194bp) protein (398aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3]
Phosphoglycerate kinase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C012_9RHIZ
scnpilot_solids2_trim150_scaffold_112_curated_26
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25974..27863)
DNA (1890bp) protein (630aa)
Sodium/hydrogen antiporter n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YKL1_MOBAS
Sodium/hydrogen antiporter {ECO:0000313|EMBL:EAS50512.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
potassium/proton antiporter; K11105 cell volume regulation protein A
scnpilot_solids2_trim150_scaffold_112_curated_27
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28094..29365)
DNA (1272bp) protein (424aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003805DC2
Bcr/CflA subfamily drug resistance transporter {ECO:0000313|EMBL:EKF18659.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
Bcr/CflA subfamily drug resistance transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein
scnpilot_solids2_trim150_scaffold_112_curated_28
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29362..29841)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FD64F8
MarR family transcriptional regulator {ECO:0000313|EMBL:EKF41825.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
MarR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_112_curated_29
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30000..32051
DNA (2052bp) protein (684aa)
peptidyl-dipeptidase Dcp (EC:3.4.15.5); K01284 peptidyl-dipeptidase Dcp [EC:3.4.15.5]
Peptidyl-dipeptidase Dcp n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLV9_9RHIZ
Peptidyl-dipeptidase Dcp {ECO:0000313|EMBL:EHK58287.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
scnpilot_solids2_trim150_scaffold_112_curated_30
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32193..34019
DNA (1827bp) protein (609aa)
GTP-binding protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FFL7_9RHIZ
GTP-binding protein {ECO:0000313|EMBL:CDX42321.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
GTP-binding protein TypA; K06207 GTP-binding protein
Displaying items 1-30 of 245 in total

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