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scnpilot_solids2_trim150_scaffold_307_curated

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Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_307_curated_1
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..249)
DNA (249bp) protein (83aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y4H3_MESOW
ABC transporter {ECO:0000313|EMBL:CDX51977.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
polar amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_307_curated_2
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(258..1133)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003671A3F
Amino acid ABC transporte {ECO:0000313|EMBL:CDX12018.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ectoine/hydroxyectoine ABC transporter solute-binding protein
scnpilot_solids2_trim150_scaffold_307_curated_3
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1357..1683)
DNA (327bp) protein (109aa)
Uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3F5D8_KETVY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO44182.1}; TaxID=880591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain Y25).;"
scnpilot_solids2_trim150_scaffold_307_curated_4
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2260..2700)
DNA (441bp) protein (147aa)
UPI0003CEF5DF related cluster n=1 Tax=unknown RepID=UPI0003CEF5DF
Uncharacterized protein {ECO:0000313|EMBL:ESY80820.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_307_curated_5
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2843..3010)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EYT4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV09125.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_307_curated_6
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3583..6195)
DNA (2613bp) protein (871aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens (strain SBW25) RepID=C3K879_PSEFS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAY48129.1}; TaxID=216595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain SBW25).;"
scnpilot_solids2_trim150_scaffold_307_curated_7
Mesorhizobium sp. L2C067A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6196..7179)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262B797
Uncharacterized protein {ECO:0000313|EMBL:ESZ35912.1}; TaxID=1287106 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C067A000.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_307_curated_8
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7176..8225)
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262B798
Uncharacterized protein {ECO:0000313|EMBL:KIA82184.1}; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_307_curated_9
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8228..9256)
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262B799
Uncharacterized protein {ECO:0000313|EMBL:KIA82185.1}; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_307_curated_10
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9253..10578)
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens (strain SBW25) RepID=C3K875_PSEFS
Uncharacterized protein {ECO:0000313|EMBL:KIA82186.1}; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_307_curated_11
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10992..11222)
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036BD2F4
Uncharacterized protein {ECO:0000313|EMBL:EJZ30602.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
scnpilot_solids2_trim150_scaffold_307_curated_12
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11227..11508)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) RepID=Q3J1F8_RHOS4
hypothetical protein
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence {ECO:0000313|EMBL:ABA79376.2}; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
scnpilot_solids2_trim150_scaffold_307_curated_13
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11544..12467)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SXW6_CAUSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ70289.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
scnpilot_solids2_trim150_scaffold_307_curated_14
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12925..13848)
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003815097
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI99151.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
scnpilot_solids2_trim150_scaffold_307_curated_15
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14163..15200)
DNA (1038bp) protein (346aa)
DNA primase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0G3D5_9SPHN
DNA primase {ECO:0000313|EMBL:EQA98170.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_307_curated_16
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15200..19519)
DNA (4320bp) protein (1440aa)
methylase n=1 Tax=Afipia birgiae RepID=UPI0002D25EAE
putative methylase/helicase
Putative methylase/helicase {ECO:0000313|EMBL:BAI96857.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
scnpilot_solids2_trim150_scaffold_307_curated_17
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19704..19970)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJR5_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS68258.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_solids2_trim150_scaffold_307_curated_18
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19967..20383)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJR6_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS68259.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_solids2_trim150_scaffold_307_curated_19
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20479..22629)
DNA (2151bp) protein (717aa)
plasmid partitioning protein ParB n=1 Tax=Afipia birgiae RepID=UPI0002E7FF8C
Plasmid partitioning protein ParB {ECO:0000313|EMBL:EQA98175.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
ParB domain-containing protein nuclease; K03497 chromosome partitioning protein, ParB family
scnpilot_solids2_trim150_scaffold_307_curated_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22801..23994)
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00036C0966
Uncharacterized protein {ECO:0000313|EMBL:CEG10590.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_307_curated_21
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24718..26208)
DNA (1491bp) protein (497aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJG9_9RHIZ
signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_307_curated_22
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26243..27682)
DNA (1440bp) protein (480aa)
pyridine nucleotide-disulphide oxidoreductase dimerisation region; K00520 mercuric reductase [EC:1.16.1.1]
Pyridine nucleotide-disulfide oxidoreductase dimerization region n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJH0_9RHIZ
Pyridine nucleotide-disulfide oxidoreductase dimerization region {ECO:0000313|EMBL:EHK59135.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
scnpilot_solids2_trim150_scaffold_307_curated_23
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27714..28529)
DNA (816bp) protein (272aa)
Transmembrane protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MEX3_9RHIZ
Transmembrane protein {ECO:0000313|EMBL:EKF20641.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_307_curated_24
Mesorhizobium sp. LNJC372A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29235..29618
DNA (384bp) protein (128aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1287256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC372A00.;"
ribonuclease P protein component; K03536 ribonuclease P protein component [EC:3.1.26.5]
Ribonuclease P n=5 Tax=Mesorhizobium RepID=V7EU96_9RHIZ
scnpilot_solids2_trim150_scaffold_307_curated_25
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29627..31489
DNA (1863bp) protein (621aa)
insertase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00036F7C52
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
membrane protein insertase, YidC/Oxa1 family domain containing; K03217 preprotein translocase subunit YidC
scnpilot_solids2_trim150_scaffold_307_curated_26
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31638..32276
DNA (639bp) protein (213aa)
UPI0003CF6046 related cluster n=1 Tax=unknown RepID=UPI0003CF6046
Vat {ECO:0000313|EMBL:ESW83594.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
streptogramin A acetyl transferase
scnpilot_solids2_trim150_scaffold_307_curated_27
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32276..32929
DNA (654bp) protein (218aa)
Probable GTP-binding protein EngB n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=ENGB_MESSB
engB; ribosome biogenesis GTP-binding protein YsxC; K03978 GTP-binding protein
Probable GTP-binding protein EngB {ECO:0000255|HAMAP-Rule:MF_00321}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
scnpilot_solids2_trim150_scaffold_307_curated_28
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33027..33755)
DNA (729bp) protein (243aa)
UPI0003CF1B3E related cluster n=1 Tax=unknown RepID=UPI0003CF1B3E
TetR family transcriptional regulator {ECO:0000313|EMBL:ESY68106.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
TetR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_307_curated_29
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33902..35086
DNA (1185bp) protein (395aa)
Multidrug resistance efflux pump n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KEI8_MESAW
multidrug resistance efflux pump
Multidrug resistance efflux pump {ECO:0000313|EMBL:AGB42930.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
scnpilot_solids2_trim150_scaffold_307_curated_30
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35120..36712
DNA (1593bp) protein (531aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VF16_9RHIZ
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:EJN04547.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
EmrB/QacA family drug resistance transporter
Displaying items 1-30 of 48 in total

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