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scnpilot_solids2_trim150_scaffold_5_curated

Search features with annotation key words

Displaying items 301-330 of 349 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_5_curated_301
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

313175..313387
DNA (213bp) protein (71aa)
Uncharacterized protein n=4 Tax=Ochrobactrum RepID=A6WYC7_OCHA4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS13981.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
scnpilot_solids2_trim150_scaffold_5_curated_302
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

313520..314158
DNA (639bp) protein (213aa)
Nuclease (SNase-like) n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIX0_NITHX
nuclease (SNase-like)
Nuclease (SNase-like) {ECO:0000313|EMBL:ABE63827.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_5_curated_303
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(314178..315245)
DNA (1068bp) protein (356aa)
UPI0003CF88B6 related cluster n=1 Tax=unknown RepID=UPI0003CF88B6
D-amino acid oxidase {ECO:0000313|EMBL:ESW87018.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5_curated_304
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

315379..316968
DNA (1590bp) protein (530aa)
Peptide chain release factor 3 n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F046_9RHIZ
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
peptide chain release factor 3; K02837 peptide chain release factor 3
scnpilot_solids2_trim150_scaffold_5_curated_305
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(317006..317377)
DNA (372bp) protein (124aa)
UPI0003CFBD41 related cluster n=1 Tax=unknown RepID=UPI0003CFBD41
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESZ00827.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
scnpilot_solids2_trim150_scaffold_5_curated_306
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(317504..318664)
DNA (1161bp) protein (387aa)
fumarylacetoacetate hydrolase n=1 Tax=Rhizobium giardinii RepID=UPI0003739497
Fumarylacetoacetate (FAA) hydrolase {ECO:0000313|EMBL:EYR83393.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5_curated_307
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

318867..319526
DNA (660bp) protein (220aa)
peroxidase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002EC2843
Uncharacterized protein {ECO:0000313|EMBL:AJE45848.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
Peroxidase
scnpilot_solids2_trim150_scaffold_5_curated_308
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

319761..321563
DNA (1803bp) protein (601aa)
integral membrane sensor signal transduction histidine kinase; K10125 two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
C4-dicarboxylate transport sensor protein DctB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3J5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB84362.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
scnpilot_solids2_trim150_scaffold_5_curated_309
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

321560..322900
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P0B5_AZOS1
Uncharacterized protein {ECO:0000313|EMBL:KKB84361.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein; K10126 two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
scnpilot_solids2_trim150_scaffold_5_curated_310
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

323143..324096
DNA (954bp) protein (318aa)
C4-dicarboxylate ABC transporter n=1 Tax=Rhizobium loti RepID=UPI00037991B7
Putative TRAP-type uncharacterized transport system, periplasmic component {ECO:0000313|EMBL:CDX11747.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
TRAP transporter solute receptor TAXI family protein; K07080
scnpilot_solids2_trim150_scaffold_5_curated_311
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

324203..326308
DNA (2106bp) protein (702aa)
C4-dicarboxylate ABC transporter n=1 Tax=Rhizobium loti RepID=UPI000377AA62
TRAP transporter, 4TM/12TM fusion protein {ECO:0000313|EMBL:CDX11746.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
TRAP transporter, 4TM/12TM fusion protein
scnpilot_solids2_trim150_scaffold_5_curated_312
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

326305..326679
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PSS0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX37492.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
protein of unknown function (DUF1850)
scnpilot_solids2_trim150_scaffold_5_curated_313
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(326696..326863)
DNA (168bp) protein (56aa)
Uncharacterized protein n=5 Tax=Mesorhizobium RepID=V7EUT6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX13831.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5_curated_314
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(327059..327739)
DNA (681bp) protein (227aa)
UPI0003CF0FB2 related cluster n=1 Tax=unknown RepID=UPI0003CF0FB2
ArsR family transcription regulator {ECO:0000313|EMBL:EHK58882.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
putative transcriptional regulator
scnpilot_solids2_trim150_scaffold_5_curated_315
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

327910..328233
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2L5Z4_9RHIZ
NIPSNAP family containing protein {ECO:0000313|EMBL:CDN46791.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
NIPSNAP family containing protein
scnpilot_solids2_trim150_scaffold_5_curated_316
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

328300..328863
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Paenibacillus elgii RepID=UPI000248C8FB
HTH-type transcriptional repressor KstR2 {ECO:0000313|EMBL:KJQ53462.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
TetR transcriptional regulator
scnpilot_solids2_trim150_scaffold_5_curated_317
Desulfovibrio sp. X2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

328860..330041
DNA (1182bp) protein (394aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00037FA1C0
Monooxygenase FAD-binding protein {ECO:0000313|EMBL:EPR44476.1}; TaxID=941449 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. X2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5_curated_318
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(330052..331035)
DNA (984bp) protein (328aa)
membrane protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036B98C9
Rubrerythrin {ECO:0000313|EMBL:EHK58878.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
rubrerythrin
scnpilot_solids2_trim150_scaffold_5_curated_319
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

331183..332184
DNA (1002bp) protein (334aa)
Serine/threonine dehydratase {ECO:0000313|EMBL:ESY76688.1}; EC=4.3.1.19 {ECO:0000313|EMBL:ESY76688.1};; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
pyridoxal-5'-phosphate-dependent protein subunit beta; K01754 threonine dehydratase [EC:4.3.1.19]
UPI0003CE9B13 related cluster n=1 Tax=unknown RepID=UPI0003CE9B13
scnpilot_solids2_trim150_scaffold_5_curated_320
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

332282..332608
DNA (327bp) protein (109aa)
Putative integral membrane protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VB26_9RHIZ
Putative integral membrane protein {ECO:0000313|EMBL:EJN03112.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
transmembrane signal peptide protein
scnpilot_solids2_trim150_scaffold_5_curated_321
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(332666..333625)
DNA (960bp) protein (320aa)
Pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530};; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_00215}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
Pantothenate kinase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y792_9RHIZ
pantothenate kinase, bacterial type
scnpilot_solids2_trim150_scaffold_5_curated_322
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(333646..333966)
DNA (321bp) protein (107aa)
Phosphoribosyl-ATP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071052}; Short=PRA-PH {ECO:0000256|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071044};; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
phosphoribosyl-ATP diphosphatase (EC:3.6.1.31); K01523 phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
UPI0003D02425 related cluster n=1 Tax=unknown RepID=UPI0003D02425
scnpilot_solids2_trim150_scaffold_5_curated_323
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(333986..334771)
DNA (786bp) protein (262aa)
hisF; imidazole glycerol phosphate synthase subunit HisF; K02500 cyclase [EC:4.1.3.-]
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
imidazole glycerol phosphate synthase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031EB052
scnpilot_solids2_trim150_scaffold_5_curated_324
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(334884..335261)
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003117850
UPF0102 protein MPLDJ20_200060 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein; K07460 putative endonuclease
scnpilot_solids2_trim150_scaffold_5_curated_325
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(335251..336156)
DNA (906bp) protein (302aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
uroporphyrin-III C/tetrapyrrole methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
16S rRNA methyltransferase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002EA44AA
scnpilot_solids2_trim150_scaffold_5_curated_326
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(336225..337904)
DNA (1680bp) protein (560aa)
Copper resistance protein C n=1 Tax=Rhizobium sp. (strain NGR234) RepID=Q6W132_RHISN
Copper export protein; K14166 copper transport protein
Copper resistance protein C {ECO:0000313|EMBL:AAQ87536.1}; Possible Copper export protein {ECO:0000313|EMBL:ACP22071.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
scnpilot_solids2_trim150_scaffold_5_curated_327
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(337910..338422)
DNA (513bp) protein (171aa)
Nuclear export factor GLE1 n=3 Tax=Mesorhizobium RepID=V7G4H8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX20252.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5_curated_328
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(338556..338936)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3C8G9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJN00599.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5_curated_329
Mesorhizobium sp. LNJC395A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

339131..340543
DNA (1413bp) protein (471aa)
UPI0003CE789E related cluster n=1 Tax=unknown RepID=UPI0003CE789E
Uncharacterized protein {ECO:0000313|EMBL:ESY17137.1}; TaxID=1287275 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC395A00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5_curated_330
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

340701..342017
DNA (1317bp) protein (439aa)
Branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJ85_9RHIZ
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:EHK59205.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
branched chain amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
Displaying items 301-330 of 349 in total

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