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scnpilot_solids2_trim150_scaffold_165_curated

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Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_165_curated_1
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..119)
DNA (117bp) protein (39aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CEK9_AGRT5
Uncharacterized protein {ECO:0000313|EMBL:KJC59314.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein; K09703 hypothetical protein
scnpilot_solids2_trim150_scaffold_165_curated_2
bacterium YEK0313, Bacteria

Not on your lists

419..1336
DNA (918bp) protein (306aa)
Transcriptional regulator, LuxR family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11H78_MESSB
Tetrathionate response regulatory protein TtrR {ECO:0000313|EMBL:CEJ13151.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
LuxR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_165_curated_3
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1448..2104
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FEP9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KJC35952.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
AroM family protein; K14591 protein AroM
scnpilot_solids2_trim150_scaffold_165_curated_4
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2157..3758
DNA (1602bp) protein (534aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Rhizobium sp. CF080 RepID=J2K8Q2_9RHIZ
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGE00152.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
dppAch2; ABC transporter, substrate-binding protein (Dipeptide)
scnpilot_solids2_trim150_scaffold_165_curated_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3836..4846
DNA (1011bp) protein (337aa)
Binding-protein-dependent transport systems inner membrane component domain protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U4H5_9PROT
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
scnpilot_solids2_trim150_scaffold_165_curated_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4843..5769
DNA (927bp) protein (309aa)
cytochrome C550 n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002375A72
dppC8; peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
scnpilot_solids2_trim150_scaffold_165_curated_7
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5766..6788
DNA (1023bp) protein (341aa)
Predicted S-transferase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U2V0_9PROT
Predicted S-transferase {ECO:0000313|EMBL:EDP61564.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_165_curated_8
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6781..7770
DNA (990bp) protein (330aa)
Dipeptide transport ATP-binding protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U2U9_9PROT
Dipeptide transport ATP-binding protein {ECO:0000313|EMBL:EDP61563.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
oligopeptide/dipeptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_165_curated_9
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8437..9357)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DAG2_BRAJP
Nucleoside hydrolase {ECO:0000313|EMBL:KGT73951.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_165_curated_10
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9354..10448)
DNA (1095bp) protein (365aa)
sn-glycerol-3-phosphate ABC transporter ATP-binding protein n=1 Tax=Martelella mediterranea RepID=UPI000377C156
ABC transporter {ECO:0000313|EMBL:AJY46322.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
putative sugar ABC transporter, ATP-binding protein
scnpilot_solids2_trim150_scaffold_165_curated_11
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10574..11602
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00038058CE
Transcriptional regulator {ECO:0000313|EMBL:EDQ33057.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
periplasmic binding protein/LacI transcriptional regulator
scnpilot_solids2_trim150_scaffold_165_curated_12
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11664..12929
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Actinomyces vaccimaxillae RepID=UPI0003B52540
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:AKI00746.1}; Flags: Precursor;; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
family 1 extracellular solute-binding protein
scnpilot_solids2_trim150_scaffold_165_curated_13
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12986..13840
DNA (855bp) protein (285aa)
Putative transmembrane permease MsmF n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RAM0_LEIAQ
Permease component of ABC-type sugar transporter {ECO:0000313|EMBL:AKI00747.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
binding-protein-dependent transport system inner membrane protein
scnpilot_solids2_trim150_scaffold_165_curated_14
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13837..14667
DNA (831bp) protein (277aa)
ABC transporter, permease protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RU47_LEIAQ
ABC-type sugar transport system, permease component {ECO:0000313|EMBL:AKI00748.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
binding-protein-dependent transport systems inner membrane component
scnpilot_solids2_trim150_scaffold_165_curated_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14756..15487)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QM45_RALPI
arylmalonate decarboxylase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
scnpilot_solids2_trim150_scaffold_165_curated_16
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15510..16253)
DNA (744bp) protein (248aa)
polar amino acid ABC transporter ATP-binding protein; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
Polar amino acid uptake family ABC transporter ATP-binding protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I2A3_AZOC5
Polar amino acid uptake family ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAF87837.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
scnpilot_solids2_trim150_scaffold_165_curated_17
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16261..17079)
DNA (819bp) protein (273aa)
Polar amino acid uptake family ABC transporter, permease protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJ58_9RHOB
Polar amino acid uptake family ABC transporter, permease protein {ECO:0000313|EMBL:EAP77389.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_165_curated_18
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17076..17819)
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI00036B1A2A
polar amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
Polar amino acid uptake family ABC transporter permease protein 1 {ECO:0000313|EMBL:BAF87835.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
scnpilot_solids2_trim150_scaffold_165_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17829..18653)
DNA (825bp) protein (275aa)
Polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJ60_9RHOB
Periplasmic component of amino acid ABC-type transporter/signal transduction system {ECO:0000313|EMBL:KFC75718.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
polar amino acid ABC transporter substrate-binding protein; K02030 polar amino acid transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_165_curated_20
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19141..20847
DNA (1707bp) protein (569aa)
Uncharacterized protein n=1 Tax=Advenella kashmirensis W13003 RepID=V8QTM0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:AIB15916.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_165_curated_21
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20975..23053
DNA (2079bp) protein (693aa)
N-methylhydantoinase A {ECO:0000313|EMBL:ESR23810.1}; EC=3.5.2.14 {ECO:0000313|EMBL:ESR23810.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
N-methylhydantoinase A (EC:3.5.2.14)
N-methylhydantoinase A n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RKM3_9RHIZ
scnpilot_solids2_trim150_scaffold_165_curated_22
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23050..24714
DNA (1665bp) protein (555aa)
N-methylhydantoinase B {ECO:0000313|EMBL:ESR23809.1}; EC=3.5.2.14 {ECO:0000313|EMBL:ESR23809.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
N-methylhydantoinase B (EC:3.5.2.14)
N-methylhydantoinase B n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4REJ6_9RHIZ
scnpilot_solids2_trim150_scaffold_165_curated_23
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24722..25900
DNA (1179bp) protein (393aa)
Cysteine desulfurase {ECO:0000313|EMBL:ESR23808.1}; EC=2.8.1.7 {ECO:0000313|EMBL:ESR23808.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
Cysteine desulfurase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TBP2_9RHIZ
class V aminotransferase
scnpilot_solids2_trim150_scaffold_165_curated_24
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26030..27076)
DNA (1047bp) protein (349aa)
Ureidoglycolate dehydrogenase {ECO:0000313|EMBL:ESR23732.1}; EC=1.1.1.154 {ECO:0000313|EMBL:ESR23732.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
Ureidoglycolate dehydrogenase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QVD8_9RHIZ
malate/L-lactate dehydrogenase
scnpilot_solids2_trim150_scaffold_165_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27090..28157)
DNA (1068bp) protein (356aa)
3-isopropylmalate dehydrogenase; K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
3-isopropylmalate dehydrogenase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QVE3_9RHIZ
3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:KFC65227.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_165_curated_26
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28265..29152)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QHH8_RALPI
Uncharacterized protein {ECO:0000313|EMBL:AGW90440.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_165_curated_27
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29168..30097)
DNA (930bp) protein (310aa)
Transcriptional regulator, GntR family n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RKF7_9RHIZ
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ESR23740.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
GntR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_165_curated_28
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30181..30897)
DNA (717bp) protein (239aa)
Putative GntR-family transcription regulator n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RCB5_9RHIZ
Putative GntR-family transcription regulator {ECO:0000313|EMBL:ESR23811.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
GntR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_165_curated_29
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30950..32710)
DNA (1761bp) protein (587aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002F141E2
Sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ESR23800.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
sigma-54 dependent trancsriptional regulator
scnpilot_solids2_trim150_scaffold_165_curated_30
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32805..34031
DNA (1227bp) protein (409aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11E49_MESSB
L-carnitine dehydratase/bile acid-inducible protein F
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ABG64326.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Displaying items 1-30 of 83 in total

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