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scnpilot_solids2_trim150_scaffold_85_curated

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Displaying items 1-30 of 191 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_85_curated_1
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(374..2452)
DNA (2079bp) protein (693aa)
RNA polymerase sigma factor RpoD n=1 Tax=Hoeflea sp. 108 RepID=UPI00037F0C24
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor
scnpilot_solids2_trim150_scaffold_85_curated_2
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2905..4815)
DNA (1911bp) protein (637aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y3U2_9RHIZ
scnpilot_solids2_trim150_scaffold_85_curated_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5254..5583
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI00035EAE88
Uncharacterized protein {ECO:0000313|EMBL:KDR90237.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_85_curated_4
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5720..6922
DNA (1203bp) protein (401aa)
Probable transporter n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98IC1_RHILO
transporter
Probable transporter {ECO:0000313|EMBL:BAB49595.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
scnpilot_solids2_trim150_scaffold_85_curated_5
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6955..7689)
DNA (735bp) protein (245aa)
dienelactone hydrolase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45]
PREDICTED: carboxymethylenebutenolidase homolog n=1 Tax=Pantholops hodgsonii RepID=UPI0003C15B96
Uncharacterized protein {ECO:0000313|EMBL:CDX44402.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
scnpilot_solids2_trim150_scaffold_85_curated_6
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7774..8511)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ETE0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV07532.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_85_curated_7
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8726..8908)
DNA (183bp) protein (61aa)
Excinuclease ABC C subunit domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZYY2_RHILW
excinuclease ABC C subunit domain-containing protein; K07461 putative endonuclease
Excinuclease ABC C subunit domain protein {ECO:0000313|EMBL:CDN53346.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
scnpilot_solids2_trim150_scaffold_85_curated_8
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9012..10589)
DNA (1578bp) protein (526aa)
hypothetical protein; K14083 trimethylamine methyltransferase [EC:2.1.1.-]
trimethylamine methyltransferase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031332BF
Trimethylamine methyltransferase {ECO:0000313|EMBL:EXL09867.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
scnpilot_solids2_trim150_scaffold_85_curated_9
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10872..11570
DNA (699bp) protein (233aa)
methionine synthase (EC:2.1.1.13)
Methionine synthase {ECO:0000313|EMBL:AEH88301.1}; EC=2.1.1.13 {ECO:0000313|EMBL:AEH88301.1};; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
Methionine synthase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y2A4_MESOW
scnpilot_solids2_trim150_scaffold_85_curated_10
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11604..11765)
DNA (162bp) protein (54aa)
Entericidin EcnAB n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MFL7_9RHIZ
Entericidin EcnAB {ECO:0000313|EMBL:EKF20946.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
entericidin EcnAB
scnpilot_solids2_trim150_scaffold_85_curated_11
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11816..12427
DNA (612bp) protein (204aa)
UPI0003CF6827 related cluster n=1 Tax=unknown RepID=UPI0003CF6827
Uncharacterized protein {ECO:0000313|EMBL:ESY85186.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
Protein of unknown function (DUF1638)
scnpilot_solids2_trim150_scaffold_85_curated_12
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12558..13196
DNA (639bp) protein (213aa)
Exopolysaccharide synthesis, ExoD n=1 Tax=Nitratireductor indicus C115 RepID=K2PA57_9RHIZ
Exopolysaccharide synthesis, ExoD {ECO:0000313|EMBL:EKF44046.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
exopolysaccharide synthesis, ExoD
scnpilot_solids2_trim150_scaffold_85_curated_13
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13205..21814)
DNA (8610bp) protein (2870aa)
cyclic beta 1-2 glucan synthetase; K13688 cyclic beta-1,2-glucan synthetase [EC:2.4.1.-]
Glycosyl transferase family protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HSB8_9RHIZ
Glycosyl transferase family protein {ECO:0000313|EMBL:EHK56328.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
scnpilot_solids2_trim150_scaffold_85_curated_14
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22182..24494)
DNA (2313bp) protein (771aa)
adenylate cyclase (EC:4.6.1.1)
Adenylate cyclase {ECO:0000313|EMBL:AGT11165.1}; EC=4.6.1.1 {ECO:0000313|EMBL:AGT11165.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
Adenylate cyclase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y696_PARAH
scnpilot_solids2_trim150_scaffold_85_curated_15
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24543..25379)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QRF1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF57607.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_85_curated_16
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25385..26812)
DNA (1428bp) protein (476aa)
Tetratricopeptide TPR_2 n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2P9M6_9RHIZ
Tetratricopeptide TPR_2 {ECO:0000313|EMBL:EKF57608.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_85_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27046..27375)
DNA (330bp) protein (110aa)
Anti-anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFR6_9RHIZ
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
anti-anti-sigma factor family protein
scnpilot_solids2_trim150_scaffold_85_curated_18
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27647..29233)
DNA (1587bp) protein (529aa)
Putative adenylate/guanylate cyclase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YME6_MOBAS
Putative adenylate/guanylate cyclase {ECO:0000313|EMBL:EAS51435.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
adenylate cyclase
scnpilot_solids2_trim150_scaffold_85_curated_19
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29346..29705)
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036E7F42
hypothetical protein
Tax=RBG_16_Alphaproteobacteria_64_48_curated
scnpilot_solids2_trim150_scaffold_85_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29979..31028
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000372A1D3
Anti-sigma regulatory factor (Ser/Thr protein kinase) {ECO:0000313|EMBL:EYR83986.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
anti-sigma regulatory factor, serine/threonine protein kinase
scnpilot_solids2_trim150_scaffold_85_curated_21
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31025..31405
DNA (381bp) protein (127aa)
PAAR repeat-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EEM6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KJS45173.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_85_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31526..32599
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00037228F1
Methyltransferase domain-containing protein {ECO:0000313|EMBL:EYR83988.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_85_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32654..33337
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMQ0_9RHIZ
FHA domain-containing protein {ECO:0000313|EMBL:EYR83989.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
FHA domain-containing protein; K11894 type VI secretion system protein ImpI
scnpilot_solids2_trim150_scaffold_85_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33379..33885
DNA (507bp) protein (169aa)
Type VI secretion lipoprotein, VC_A0113 family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDC8_9RHIZ
Type VI secretion lipoprotein, VC_A0113 family {ECO:0000313|EMBL:EYR83990.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11906 type VI secretion system protein VasD
scnpilot_solids2_trim150_scaffold_85_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33942..35279
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036C9A3D
Type VI secretion protein, VC_A0114 family {ECO:0000313|EMBL:EYR83991.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11893 type VI secretion system protein ImpJ
scnpilot_solids2_trim150_scaffold_85_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35294..36763
DNA (1470bp) protein (490aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EEL4_9RHIZ
Type IV / VI secretion system protein, DotU family {ECO:0000313|EMBL:EYR83992.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_85_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36765..38573
DNA (1809bp) protein (603aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000371E5AA
Uncharacterized protein {ECO:0000313|EMBL:EYR83993.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Hypothetical Protein
scnpilot_solids2_trim150_scaffold_85_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38570..42112
DNA (3543bp) protein (1181aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI0003817D21
Type VI secretion protein IcmF {ECO:0000313|EMBL:EYR83994.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative Type VI secretion protein IcmF-like; K11891 type VI secretion system protein ImpL
scnpilot_solids2_trim150_scaffold_85_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42115..43941
DNA (1827bp) protein (609aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BWX7_9RHIZ
Type VI secretion protein, VC_A0110 family {ECO:0000313|EMBL:EYR83995.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11896 type VI secretion system protein ImpG
scnpilot_solids2_trim150_scaffold_85_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43905..44996
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000366F85F
Type VI secretion protein, VC_A0111 family {ECO:0000313|EMBL:EYR83996.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11895 type VI secretion system protein ImpH
Displaying items 1-30 of 191 in total

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