ggKbase home page

scnpilot_solids2_trim150_scaffold_575_curated

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_575_curated_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..312
DNA (312bp) protein (104aa)
arsenic transporter n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034BC179
bile acid:sodium symporter; K03325 arsenite transporter, ACR3 family
Bile acid:sodium symporter {ECO:0000313|EMBL:ABD06680.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
scnpilot_solids2_trim150_scaffold_575_curated_2
unknown

Not on your lists

comp(514..1071)
DNA (558bp) protein (186aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_575_curated_3
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1437..1628
DNA (192bp) protein (64aa)
Integrase n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2HLH2_BURVI
Integrase {ECO:0000313|EMBL:KIE42240.1}; TaxID=1510391 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
Phage integrase
scnpilot_solids2_trim150_scaffold_575_curated_4
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1888..3570)
DNA (1683bp) protein (561aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U7P2_METS4
Uncharacterized protein {ECO:0000313|EMBL:ETR79102.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_575_curated_5
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3844..5313
DNA (1470bp) protein (490aa)
amidase (EC:3.5.1.4)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000307BFF9
Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI77561.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
scnpilot_solids2_trim150_scaffold_575_curated_6
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5357..6013)
DNA (657bp) protein (219aa)
gst3; gst3; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QNU7_9DELT
Glutathione S-transferase {ECO:0000313|EMBL:EPX58213.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
scnpilot_solids2_trim150_scaffold_575_curated_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6328..6978)
DNA (651bp) protein (217aa)
Amidohydrolase family protein n=1 Tax=Escherichia coli P0301867.7 RepID=N4PAX7_ECOLX
Amidohydrolase family protein {ECO:0000313|EMBL:ENH11083.1}; TaxID=1116070 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0301867.7.;"
putative deaminase
scnpilot_solids2_trim150_scaffold_575_curated_8
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6995..7450)
DNA (456bp) protein (152aa)
deaminase; K08710 N-isopropylammelide isopropylaminohydrolase [EC:3.5.99.4]
N-isopropylammelide isopropylaminohydrolase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0X2_PARDP
Deaminase {ECO:0000313|EMBL:KGJ03772.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
scnpilot_solids2_trim150_scaffold_575_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7728..8216)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UHP6_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EGP54115.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_575_curated_10
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8397..8996)
DNA (600bp) protein (200aa)
Fis family transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LQW0_9RHIZ
LuxR family transcriptional regulator {ECO:0000313|EMBL:KFL27259.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Fis family transcriptional regulator
scnpilot_solids2_trim150_scaffold_575_curated_11
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8993..10531)
DNA (1539bp) protein (513aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Histidine kinase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B138_PARDP
histidine kinase
scnpilot_solids2_trim150_scaffold_575_curated_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10605..11465)
DNA (861bp) protein (287aa)
Transcriptional regulator, LysR family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0X3_PARDP
Uncharacterized protein {ECO:0000313|EMBL:CDX62653.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
LysR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_575_curated_13
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11702..12295
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FD2969
Uncharacterized protein {ECO:0000313|EMBL:CDX62655.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ankyrin repeat-containing protein
scnpilot_solids2_trim150_scaffold_575_curated_14
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12332..12820
DNA (489bp) protein (163aa)
CMP/dCMP deaminase (EC:3.5.4.3)
dCMP deaminase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031A1DAA
CMP/dCMP deaminase {ECO:0000313|EMBL:ELA01217.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
scnpilot_solids2_trim150_scaffold_575_curated_15
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12825..13040
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030065F7
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CDX20513.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
cynX; MFS transporter; MFS transporter cyanate permease family; K03449 MFS transporter, CP family, cyanate transporter
scnpilot_solids2_trim150_scaffold_575_curated_16
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13134..14045
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030065F7
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CDX20513.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
major facilitator transporter; K03449 MFS transporter, CP family, cyanate transporter
scnpilot_solids2_trim150_scaffold_575_curated_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14020..14634
DNA (615bp) protein (205aa)
Transcriptional regulator, AraC family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJK3_NITHX
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABE63594.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_575_curated_18
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14551..15078)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037390E7
Transposase {ECO:0000313|EMBL:EJL20243.1}; Flags: Fragment;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
transposase IS116/IS110/IS902 family protein
scnpilot_solids2_trim150_scaffold_575_curated_19
unknown

Not on your lists

comp(15314..15412)
DNA (99bp) protein (33aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_575_curated_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15412..15843)
DNA (432bp) protein (144aa)
Transposase, IS4 family n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q12ZW2_RHOPS
transposase, IS4
Transposase, IS4 family {ECO:0000313|EMBL:ABE41627.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
scnpilot_solids2_trim150_scaffold_575_curated_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16221..17762
DNA (1542bp) protein (514aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003642793
Glucans biosynthesis protein G {ECO:0000313|EMBL:KFC70317.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
mdoD; glucan biosynthesis protein D; K03670 periplasmic glucans biosynthesis protein
scnpilot_solids2_trim150_scaffold_575_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17750..19939
DNA (2190bp) protein (730aa)
Glucans biosynthesis glucosyltransferase H {ECO:0000313|EMBL:KFC70318.1}; EC=2.4.1.- {ECO:0000313|EMBL:KFC70318.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003126AFC
glycosyl transferase family 2
scnpilot_solids2_trim150_scaffold_575_curated_23
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20702..21586)
DNA (885bp) protein (295aa)
UPI0003CE164C related cluster n=1 Tax=unknown RepID=UPI0003CE164C
Transposase {ECO:0000313|EMBL:ESY89223.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
transposase IS116/IS110/IS902 family protein
scnpilot_solids2_trim150_scaffold_575_curated_24
unknown

Not on your lists

comp(21695..21970)
DNA (276bp) protein (92aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_575_curated_25
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22075..23037)
DNA (963bp) protein (321aa)
Putative choline sulfate-utilization transcription factor n=2 Tax=Burkholderia multivorans RepID=B9AYF8_9BURK
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:KHS16634.1}; TaxID=87883 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans.;"
scnpilot_solids2_trim150_scaffold_575_curated_26
unknown

Not on your lists

23242..23961
DNA (720bp) protein (240aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_575_curated_27
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24014..25018
DNA (1005bp) protein (335aa)
5,10-methylenetetrahydromethanopterin reductase (EC:1.5.99.11); K15510 coenzyme F420-dependent glucose-6-phosphate dehydrogenase [EC:1.1.98.2]
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036A651E
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
scnpilot_solids2_trim150_scaffold_575_curated_28
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25064..25822
DNA (759bp) protein (253aa)
F420-dependent oxidoreductase; K12234 coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34]
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000381F660
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
scnpilot_solids2_trim150_scaffold_575_curated_29
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25819..26766
DNA (948bp) protein (316aa)
LPPG:FO 2-phospho-L-lactate transferase (EC:2.7.8.28)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00035E7D71
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
scnpilot_solids2_trim150_scaffold_575_curated_30
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26763..27746)
DNA (984bp) protein (328aa)
Oligopeptide/dipeptide ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HEG8_9BRAD
Oligopeptide/dipeptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:ERF82866.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
peptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
Displaying items 1-30 of 36 in total

View Taxonomy