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scnpilot_solids2_trim150_scaffold_708_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_708_curated_1
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..2433
DNA (2433bp) protein (811aa)
Na+/proline symporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXM5_9RHIZ
Histidine kinase {ECO:0000313|EMBL:KFG67086.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
multi-sensor hybrid histidine kinase
scnpilot_solids2_trim150_scaffold_708_curated_2
unknown

Not on your lists

2430..2807
DNA (378bp) protein (126aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_708_curated_3
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2849..3430
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034965F1
hypothetical protein; K09796 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB79541.1}; Flags: Precursor;; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
scnpilot_solids2_trim150_scaffold_708_curated_4
bacterium YEK0313, Bacteria

Not on your lists

3427..4047
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DF66A6
Uncharacterized protein {ECO:0000313|EMBL:CEJ11769.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
electron transport protein SCO1/SenC; K07152
scnpilot_solids2_trim150_scaffold_708_curated_5
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4052..4672)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000314DC11
DSBA oxidoreductase {ECO:0000313|EMBL:KFG67084.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
DSBA oxidoreductase
scnpilot_solids2_trim150_scaffold_708_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5009..6259
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI000361398E
Uncharacterized protein {ECO:0000313|EMBL:KFC64694.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_708_curated_7
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6487..7248
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00037E1DA8
Uncharacterized protein {ECO:0000313|EMBL:EAS48834.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_708_curated_8
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7317..8165
DNA (849bp) protein (283aa)
aminotransferase class IV protein; K00824 D-alanine transaminase [EC:2.6.1.21]
Aminotransferase class IV n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IPM3_METNO
Aminotransferase class IV {ECO:0000313|EMBL:ACL62315.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_708_curated_9
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8277..9332
DNA (1056bp) protein (352aa)
Putative integral membrane protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YU24_9RHIZ
Putative integral membrane protein {ECO:0000313|EMBL:EIM27466.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein; K07027
scnpilot_solids2_trim150_scaffold_708_curated_10
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9329..10618
DNA (1290bp) protein (430aa)
histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FB2984
scnpilot_solids2_trim150_scaffold_708_curated_11
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10794..11852
DNA (1059bp) protein (353aa)
phosphate ABC transporter substrate-binding protein n=1 Tax=Methyloferula stellata RepID=UPI00036A2A1D
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
phosphate ABC transporter substrate-binding protein; K02040 phosphate transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_708_curated_12
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11943..12935
DNA (993bp) protein (331aa)
phosphate transporter permease subunit PstC n=1 Tax=Kaistia granuli RepID=UPI00036E948A
Phosphate transport system permease protein PstC {ECO:0000313|EMBL:EJW10963.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
phosphate ABC transporter permease; K02037 phosphate transport system permease protein
scnpilot_solids2_trim150_scaffold_708_curated_13
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12938..13777
DNA (840bp) protein (280aa)
Phosphate ABC transporter, inner membrane subunit PstA n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y0K2_MESOW
phosphate ABC transporter permease; K02038 phosphate transport system permease protein
Phosphate ABC transporter, inner membrane subunit PstA {ECO:0000313|EMBL:AEH85921.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
scnpilot_solids2_trim150_scaffold_708_curated_14
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13774..14613
DNA (840bp) protein (280aa)
phosphate ABC transporter ATPase; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27]
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
phosphate ABC transporter ATP-binding protein n=1 Tax=Kaistia granuli RepID=UPI000364365E
scnpilot_solids2_trim150_scaffold_708_curated_15
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14639..15355
DNA (717bp) protein (239aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UFB0_METS4
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
phosphate uptake regulator PhoU; K02039 phosphate transport system protein
scnpilot_solids2_trim150_scaffold_708_curated_16
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15355..16059
DNA (705bp) protein (235aa)
Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Microvirga sp. WSM3557 RepID=I4YU31_9RHIZ
Phosphate regulon transcriptional regulatory protein PhoB {ECO:0000313|EMBL:EIM27473.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
winged helix family two component transcriptional regulator PhoB; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB
scnpilot_solids2_trim150_scaffold_708_curated_17
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16066..16413)
DNA (348bp) protein (116aa)
Putative translation initiation inhibitor, yjgF family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKH7_9RHIZ
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:EIM24469.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
endoribonuclease L-PSP
scnpilot_solids2_trim150_scaffold_708_curated_18
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16419..16934)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EA74E7
hypothetical protein; K13583 GcrA cell cycle regulator
Uncharacterized protein {ECO:0000313|EMBL:CAL80377.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
scnpilot_solids2_trim150_scaffold_708_curated_19
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17444..18649
DNA (1206bp) protein (402aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
acetylornithine and succinylornithine aminotransferase; K00821 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
acetylornithine aminotransferase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003642A9B
scnpilot_solids2_trim150_scaffold_708_curated_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18654..19598
DNA (945bp) protein (315aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000376ECDE
ornithine carbamoyltransferase
scnpilot_solids2_trim150_scaffold_708_curated_21
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19598..20569
DNA (972bp) protein (324aa)
Hsp33-like chaperonin n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LJE8_9RHIZ
hslO; Hsp33-like chaperonin; K04083 molecular chaperone Hsp33
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
scnpilot_solids2_trim150_scaffold_708_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20872..22623
DNA (1752bp) protein (584aa)
Arabinose efflux permease family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YS10_9RHIZ
MFS permease {ECO:0000313|EMBL:KFC72940.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
MFS permease
scnpilot_solids2_trim150_scaffold_708_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22565..23404)
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI00036DAC2C
Uncharacterized protein {ECO:0000313|EMBL:KFC63396.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_708_curated_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23422..23814)
DNA (393bp) protein (131aa)
ApaG n=1 Tax=Afipia birgiae RepID=UPI0002ED04BA
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ApaG domain-containing protein; K06195 ApaG protein
scnpilot_solids2_trim150_scaffold_708_curated_25
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23979..25064
DNA (1086bp) protein (362aa)
2'-deoxycytidine 5'-triphosphate deaminase; K01494 dCTP deaminase [EC:3.5.4.13]
Deoxycytidine deaminase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YU38_9RHIZ
Deoxycytidine deaminase {ECO:0000313|EMBL:EIM27480.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
scnpilot_solids2_trim150_scaffold_708_curated_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25210..25755)
DNA (546bp) protein (182aa)
UPI0003CDF39C related cluster n=1 Tax=unknown RepID=UPI0003CDF39C
Uncharacterized protein {ECO:0000313|EMBL:KFC74632.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_708_curated_27
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25828..27393)
DNA (1566bp) protein (522aa)
OmpA/MotB domain protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8INF2_METNO
OmpA protein {ECO:0000313|EMBL:BAQ48532.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
OmpA/MotB domain-containing protein
Displaying 27 items

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