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scnpilot_solids2_trim150_scaffold_1548_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1548_curated_1
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..162)
DNA (162bp) protein (54aa)
ABC transporter, membrane spanning protein (Oligopeptide) n=2 Tax=Agrobacterium RepID=Q7CWP9_AGRT5
ABC transporter membrane spanning protein (oligopeptide); K02033 peptide/nickel transport system permease protein
ABC transporter, membrane spanning protein (Oligopeptide) {ECO:0000313|EMBL:AAK88311.2}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
scnpilot_solids2_trim150_scaffold_1548_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(165..2150)
DNA (1986bp) protein (662aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Rhizobium meliloti RepID=UPI000360A80F
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:KFC73254.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative mureinpeptideoligopeptide ABC transporter periplasmic solute-binding protein precursor
scnpilot_solids2_trim150_scaffold_1548_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2147..4042)
DNA (1896bp) protein (632aa)
Nickel-transporting ATPase., Polyamine-transporting ATPase n=5 Tax=Rhizobium meliloti RepID=F6E8Y3_SINMK
Putative peptide transporter {ECO:0000313|EMBL:KFC73253.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
mureinpeptideoligopeptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_1548_curated_4
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4137..5480)
DNA (1344bp) protein (448aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22); K13015 UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.-]
Nucleotide sugar dehydrogenase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IG45_METNO
WecC protein {ECO:0000313|EMBL:BAQ46798.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
scnpilot_solids2_trim150_scaffold_1548_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5477..6199)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FE36B6
Protein tyrosine/serine phosphatase {ECO:0000313|EMBL:KFC63416.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
protein tyrosine/serine phosphatase
scnpilot_solids2_trim150_scaffold_1548_curated_6
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6315..6821
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000378A533
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACK49995.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
scnpilot_solids2_trim150_scaffold_1548_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6932..7462
DNA (531bp) protein (177aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
inorganic pyrophosphatase (EC:3.6.1.1); K01507 inorganic pyrophosphatase [EC:3.6.1.1]
Inorganic pyrophosphatase n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QT56_METTR
scnpilot_solids2_trim150_scaffold_1548_curated_8
bacterium YEK0313, Bacteria

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7485..8327
DNA (843bp) protein (281aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247611};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247610}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
panC; pantoate--beta-alanine ligase (EC:6.3.2.1); K01918 pantoate--beta-alanine ligase [EC:6.3.2.1]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FE2D65
scnpilot_solids2_trim150_scaffold_1548_curated_9
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8338..9339)
DNA (1002bp) protein (334aa)
citrate lyase subunit beta; K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]
Citrate lyase beta subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZH4_9RHIZ
Malyl-CoA thiolesterase {ECO:0000313|EMBL:KFG70697.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
scnpilot_solids2_trim150_scaffold_1548_curated_10
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9452..10168
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A8L8_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH90552.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_1548_curated_11
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10186..11154
DNA (969bp) protein (323aa)
Threonine dehydratase {ECO:0000313|EMBL:KFG70699.1}; EC=4.3.1.19 {ECO:0000313|EMBL:KFG70699.1};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19]
Threonine dehydratase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZH3_9RHIZ
scnpilot_solids2_trim150_scaffold_1548_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11244..11930
DNA (687bp) protein (229aa)
Carbonic anhydrase {ECO:0000313|EMBL:KFC63708.1}; EC=4.2.1.1 {ECO:0000313|EMBL:KFC63708.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1]
Carbonic anhydrase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZH2_9RHIZ
scnpilot_solids2_trim150_scaffold_1548_curated_13
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12014..12700
DNA (687bp) protein (229aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HNJ4_9BRAD
Glutathione S-transferase {ECO:0000313|EMBL:ERF86383.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
scnpilot_solids2_trim150_scaffold_1548_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12800..13831)
DNA (1032bp) protein (344aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
aspartate-semialdehyde dehydrogenase; K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
aspartate-semialdehyde dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031441EC
scnpilot_solids2_trim150_scaffold_1548_curated_15
unknown

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14254..14880
DNA (627bp) protein (209aa)

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Displaying 15 items

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