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scnpilot_solids2_trim150_scaffold_1251_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1251_curated_1
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1283)
DNA (1281bp) protein (427aa)
Ammonium transporter n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IRZ5_METNO
ammonium transporter; K03320 ammonium transporter, Amt family
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_1251_curated_2
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1316..1654)
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003052E49
nitrogen regulatory protein P-II; K04752 nitrogen regulatory protein P-II 2
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:ACA19815.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_1251_curated_3
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1871..2749)
DNA (879bp) protein (293aa)
acyl-CoA thioesterase II (EC:3.1.2.2); K10805 acyl-CoA thioesterase II [EC:3.1.2.-]
acyl-CoA thioesterase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F7996E
Acyl-CoA thioesterase {ECO:0000313|EMBL:KFG70021.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
scnpilot_solids2_trim150_scaffold_1251_curated_4
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2846..4081
DNA (1236bp) protein (412aa)
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
2-octaprenyl-6-methoxyphenyl hydroxylase n=1 Tax=Xanthobacteraceae RepID=UPI000368D9ED
UbiH protein {ECO:0000313|EMBL:BAQ46137.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
scnpilot_solids2_trim150_scaffold_1251_curated_5
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4163..4402)
DNA (240bp) protein (80aa)
UPF0434 protein MettrDRAFT_1437 n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QNR1_METTR
UPF0434 protein GL4_0348 {ECO:0000256|HAMAP-Rule:MF_01187}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1251_curated_6
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4399..5061)
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D93710
Peptidase S16 {ECO:0000313|EMBL:KJC61936.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
peptidase S16, lon-like; K07157
scnpilot_solids2_trim150_scaffold_1251_curated_7
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5090..6037)
DNA (948bp) protein (316aa)
Thioredoxin n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZH7_9RHIZ
Thioredoxin {ECO:0000313|EMBL:KFG70693.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
thioredoxin; K05838 putative thioredoxin
scnpilot_solids2_trim150_scaffold_1251_curated_8
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6116..6670)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E34E1C
YbaK/prolyl-tRNA synthetase associated domain-containing protein {ECO:0000313|EMBL:EKF17837.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1251_curated_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7032..8900
DNA (1869bp) protein (623aa)
DEAD/DEAH box helicase; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
DEAD/DEAH box helicase domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A8B9_STAND
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ADH88592.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_1251_curated_10
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9386..10723)
DNA (1338bp) protein (446aa)
Aminotransferase, class III {ECO:0000313|EMBL:EFH12111.1}; EC=2.6.1.62 {ECO:0000313|EMBL:EFH12111.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Aminotransferase, class III n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKR1_9PROT
aminotransferase
scnpilot_solids2_trim150_scaffold_1251_curated_11
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10780..12852)
DNA (2073bp) protein (691aa)
5-oxoprolinase (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14]
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137Y9_RHOPS
Methylhydantoinase {ECO:0000313|EMBL:ETR76536.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
scnpilot_solids2_trim150_scaffold_1251_curated_12
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12854..14512)
DNA (1659bp) protein (553aa)
5-oxoprolinase (EC:3.5.2.9); K01474 N-methylhydantoinase B [EC:3.5.2.14]
N-methylhydantoinase B n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IH42_9BRAD
N-methylhydantoinase B {ECO:0000313|EMBL:ERF83040.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
scnpilot_solids2_trim150_scaffold_1251_curated_13
bacterium YEK0313, Bacteria

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comp(14686..15393)
DNA (708bp) protein (236aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137Z2_RHOPS
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:CEJ13571.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter-like protein
scnpilot_solids2_trim150_scaffold_1251_curated_14
bacterium YEK0313, Bacteria

Not on your lists

comp(15380..16117)
DNA (738bp) protein (246aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137Z3_RHOPS
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000313|EMBL:CEJ13570.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter-like protein
scnpilot_solids2_trim150_scaffold_1251_curated_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16114..17079)
DNA (966bp) protein (322aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137Z4_RHOPS
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ABE39595.1}; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
scnpilot_solids2_trim150_scaffold_1251_curated_16
bacterium YEK0313, Bacteria

Not on your lists

comp(17079..17837)
DNA (759bp) protein (253aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137Z5_RHOPS
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:CEJ13568.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
inner-membrane translocator
Displaying 16 items

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