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scnpilot_solids2_trim150_scaffold_1641_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1641_curated_1
Rhodopirellula sallentina, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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3..659
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI00035ECD9B
Cap5J protein-transmembrane protein {ECO:0000313|EMBL:EMI57615.1}; TaxID=1263870 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sallentina SM41.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1641_curated_2
unknown

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comp(573..860)
DNA (288bp) protein (96aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1641_curated_3
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(985..1788)
DNA (804bp) protein (268aa)
phosphonate ABC transporter permease n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00036F3E98
Phosphonate ABC transporter, permease protein PhnE {ECO:0000313|EMBL:AIQ93056.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
phosphonate ABC transporter inner membrane protein; K02042 phosphonate transport system permease protein
scnpilot_solids2_trim150_scaffold_1641_curated_4
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1785..2579)
DNA (795bp) protein (265aa)
Phosphonate ABC transporter inner membrane protein n=1 Tax=Methylobacterium sp. GXF4 RepID=I9WSW9_9RHIZ
Phosphonate ABC transporter inner membrane protein {ECO:0000313|EMBL:EIZ83606.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
phosphonate ABC transporter inner membrane protein; K02042 phosphonate transport system permease protein
scnpilot_solids2_trim150_scaffold_1641_curated_5
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2576..3385)
DNA (810bp) protein (270aa)
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
phosphonate ABC transporter ATPase; K02041 phosphonate transport system ATP-binding protein [EC:3.6.3.28]
Phosphonate ABC transporter ATPase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YRK5_9RHIZ
scnpilot_solids2_trim150_scaffold_1641_curated_6
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3385..4407)
DNA (1023bp) protein (341aa)
phosphonate ABC transporter substrate-binding protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000362CA1C
Phosphonate ABC transporter periplasmic phosphonate binding protein {ECO:0000313|EMBL:GAN51068.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
phosphonate ABC transporter periplasmic phosphonate-binding protein; K02044 phosphonate transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_1641_curated_7
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4594..5382)
DNA (789bp) protein (263aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSI9_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EIM26931.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
GntR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_1641_curated_8
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5504..6892
DNA (1389bp) protein (463aa)
flagellar protein FlgA n=1 Tax=Rhizobium leguminosarum RepID=UPI000380BD75
SAF domain-containing protein
SAF domain-containing protein {ECO:0000313|EMBL:ADH90916.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_1641_curated_9
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7328..8332)
DNA (1005bp) protein (335aa)
Amidohydrolase 2 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IWD4_METNO
amidohydrolase 2; K07046
Amidohydrolase 2 {ECO:0000313|EMBL:ACL62724.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_1641_curated_10
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8680..9423
DNA (744bp) protein (248aa)
Transcriptional regulator n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3CYK3_9BRAD
Transcriptional regulator {ECO:0000313|EMBL:EJN15324.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1641_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9447..10364
DNA (918bp) protein (306aa)
6-phosphogluconate dehydrogenase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00035FF043
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:KFC65750.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1641_curated_12
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10374..11057
DNA (684bp) protein (228aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2W957_9BRAD
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EJN15322.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_1641_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11066..11734
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DI14_BRAJP
Polar amino acid ABC transporter inner membrane subunit {ECO:0000313|EMBL:KFC65752.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K02029 polar amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_1641_curated_14
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11767..12504
DNA (738bp) protein (246aa)
ABC-type polar amino acid transport system, ATPase component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXT1_9RHIZ
ABC-type polar amino acid transport system, ATPase component {ECO:0000313|EMBL:EIM28773.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ABC transporter
scnpilot_solids2_trim150_scaffold_1641_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12520..13314
DNA (795bp) protein (265aa)
amino acid ABC transporter n=1 Tax=Bradyrhizobium japonicum RepID=UPI000376F9DC
Periplasmic component of amino acid ABC-type transporter/signal transduction system {ECO:0000313|EMBL:KFC65754.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
extracellular solute-binding protein; K02030 polar amino acid transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_1641_curated_16
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13520..13966
DNA (447bp) protein (149aa)
sugar-phosphate isomerase; K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6]
Sugar-phosphate isomerase, RpiB/LacA/LacB family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYD2_STAND
Ribose 5-phosphate isomerase {ECO:0000313|EMBL:KGT76609.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
scnpilot_solids2_trim150_scaffold_1641_curated_17
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13990..14244
DNA (255bp) protein (85aa)
ribokinase-like domain-containing protein; K00852 ribokinase [EC:2.7.1.15]
Sugar kinase, ribokinase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2W952_9BRAD
PfkB domain-containing protein {ECO:0000313|EMBL:EJZ32289.1}; Flags: Fragment;; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
Displaying 17 items

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