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scnpilot_solids2_trim150_scaffold_1798_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1798_curated_1
unknown

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comp(2..316)
DNA (315bp) protein (105aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1798_curated_2
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(355..618)
DNA (264bp) protein (88aa)
30S ribosomal protein S16 n=1 Tax=Xanthomonas RepID=UPI000262A8B1
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
scnpilot_solids2_trim150_scaffold_1798_curated_3
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(740..2287)
DNA (1548bp) protein (516aa)
Signal recognition particle protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ82_9RHIZ
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
signal recognition particle protein; K03106 signal recognition particle subunit SRP54
scnpilot_solids2_trim150_scaffold_1798_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2457..3167)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000374D803
Transcription activator, effector binding {ECO:0000313|EMBL:KFC73981.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transcription activator effector binding
scnpilot_solids2_trim150_scaffold_1798_curated_5
Paenirhodobacter enshiensis, Paenirhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3207..4526)
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000366AD8D
Uncharacterized protein {ECO:0000313|EMBL:KFI30098.1}; TaxID=1105367 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paenirhodobacter.;" source="Paenirhodobacter enshiensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1798_curated_6
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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4650..5546
DNA (897bp) protein (299aa)
diaminopimelate epimerase; K01778 diaminopimelate epimerase [EC:5.1.1.7]
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
Diaminopimelate epimerase n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IZH4_POLGS
scnpilot_solids2_trim150_scaffold_1798_curated_7
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5543..6805
DNA (1263bp) protein (421aa)
MiaB family protein, possibly involved in tRNA or rRNA modification n=1 Tax=Rhodovulum sp. PH10 RepID=J6L8U5_9RHOB
MiaB family protein, possibly involved in tRNA or rRNA modification {ECO:0000313|EMBL:EJW09908.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
MiaB-like tRNA modifying protein
scnpilot_solids2_trim150_scaffold_1798_curated_8
bacterium YEK0313, Bacteria

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6802..7974
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F11F8C
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor
scnpilot_solids2_trim150_scaffold_1798_curated_9
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8119..8835)
DNA (717bp) protein (239aa)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UG86_METS4
Uncharacterized protein {ECO:0000313|EMBL:CDM24370.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
fumarylacetoacetate (FAA) hydrolase
scnpilot_solids2_trim150_scaffold_1798_curated_10
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8956..9648
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003117C56
Probable intracellular septation protein A {ECO:0000256|HAMAP-Rule:MF_00189, ECO:0000256|SAAS:SAAS00082307}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
intracellular septation protein A; K06190 intracellular septation protein
scnpilot_solids2_trim150_scaffold_1798_curated_11
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9666..10238)
DNA (573bp) protein (191aa)
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RIQ3_9RHIZ
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase {ECO:0000313|EMBL:ESR25966.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
protein thiol/disulfide oxidoreductase DsbE; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
scnpilot_solids2_trim150_scaffold_1798_curated_12
unknown

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comp(10235..10378)
DNA (144bp) protein (48aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1798_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10378..11124)
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DE95A8
Cytochrome c-type biogenesis protein CcmC {ECO:0000313|EMBL:KFC62930.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ccmC; heme ABC transporter permease; K02195 heme exporter protein C
scnpilot_solids2_trim150_scaffold_1798_curated_14
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11203..11874)
DNA (672bp) protein (224aa)
Heme exporter protein B n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QRR3_METTR
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
heme exporter protein CcmB; K02194 heme exporter protein B
scnpilot_solids2_trim150_scaffold_1798_curated_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11871..12470)
DNA (600bp) protein (200aa)
cytochrome C biogenesis protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41]
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
cytochrome C biogenesis protein CcmA n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B6B2A7
scnpilot_solids2_trim150_scaffold_1798_curated_16
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12697..12840
DNA (144bp) protein (48aa)
aconitate hydratase; K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
Aconitate hydratase 1 n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IJ60_BEII9
Displaying 16 items

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