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scnpilot_solids2_trim150_scaffold_2177_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2177_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..537)
DNA (537bp) protein (179aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00093350};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
phosphatidylserine decarboxylase (EC:4.1.1.65); K01613 phosphatidylserine decarboxylase [EC:4.1.1.65]
phosphatidylserine decarboxylase n=1 Tax=Methyloferula stellata RepID=UPI0003612ACD
scnpilot_solids2_trim150_scaffold_2177_curated_2
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(939..3860)
DNA (2922bp) protein (974aa)
lactate dehydrogenase n=1 Tax=Xanthobacteraceae RepID=UPI0003793ED9
FAD linked oxidase domain protein {ECO:0000313|EMBL:ADH89824.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
FAD linked oxidase; K06911
scnpilot_solids2_trim150_scaffold_2177_curated_3
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4150..5349
DNA (1200bp) protein (400aa)
class V aminotransferase; K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
serine--glyoxylate aminotransferase n=1 Tax=Xanthobacteraceae RepID=UPI0003765B8A
Aminotransferase class V {ECO:0000313|EMBL:ADH89825.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_2177_curated_4
bacterium YEK0313, Bacteria

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5355..6038
DNA (684bp) protein (228aa)
GntR family transcriptional regulator n=1 Tax=Xanthobacteraceae RepID=UPI00037040DB
Putative HTH-type transcriptional regulator YdfH {ECO:0000313|EMBL:CEJ10004.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
GntR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_2177_curated_5
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6234..6464)
DNA (231bp) protein (77aa)
NAD-dependent formate dehydrogenase; K00126 formate dehydrogenase, delta subunit [EC:1.2.1.2]
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI0003809D46
Formate dehydrogenase {ECO:0000313|EMBL:KGT78743.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
scnpilot_solids2_trim150_scaffold_2177_curated_6
bacterium YEK0313, Bacteria

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comp(6461..7279)
DNA (819bp) protein (273aa)
Formate dehydrogenase family accessory protein FdhD n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXY2_9RHIZ
Protein FdhD homolog {ECO:0000256|HAMAP-Rule:MF_00187, ECO:0000256|SAAS:SAAS00093832}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
formate dehydrogenase family accessory protein FdhD; K02379 FdhD protein
scnpilot_solids2_trim150_scaffold_2177_curated_7
bacterium YEK0313, Bacteria

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comp(7284..10145)
DNA (2862bp) protein (954aa)
formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Formate dehydrogenase, alpha subunit, archaeal-type n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z4S7_9RHIZ
Putative formate dehydrogenase {ECO:0000313|EMBL:CEJ11792.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
scnpilot_solids2_trim150_scaffold_2177_curated_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10156..10968)
DNA (813bp) protein (271aa)
NADH dehydrogenase (quinone); K05903 NADH dehydrogenase (quinone) [EC:1.6.99.5]
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z4S8_9RHIZ
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit {ECO:0000313|EMBL:EIM31220.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Displaying 8 items

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