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scnpilot_solids2_trim150_scaffold_678_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_678_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(214..579)
DNA (366bp) protein (122aa)
Chemotaxis protein CheY n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG84_PELHB
Putative response regulator receiver (CheY-like protein) {ECO:0000313|EMBL:KFC73863.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
chemotaxis protein CheY; K03413 two-component system, chemotaxis family, response regulator CheY
scnpilot_solids2_trim150_scaffold_678_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(607..1683)
DNA (1077bp) protein (359aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cheB; chemotaxis response regulator protein-glutamate methylesterase; K03412 two-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61]
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FR08_PHAMO
scnpilot_solids2_trim150_scaffold_678_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1686..2288)
DNA (603bp) protein (201aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cheD; chemotaxis protein CheD; K03411 chemotaxis protein CheD [EC:3.5.1.44]
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8T471_9GAMM
scnpilot_solids2_trim150_scaffold_678_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2285..3139)
DNA (855bp) protein (285aa)
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
chemotaxis protein CheR (EC:2.1.1.80); K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
Chemotaxis protein methyltransferase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I692_RHOVT
scnpilot_solids2_trim150_scaffold_678_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3151..5136)
DNA (1986bp) protein (662aa)
Putative methyl-accepting chemotaxis receptor n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z9H0_AZOL4
Putative methyl-accepting chemotaxis protein MCP {ECO:0000313|EMBL:KFC73867.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative methyl-accepting chemotaxis receptor; K03406 methyl-accepting chemotaxis protein
scnpilot_solids2_trim150_scaffold_678_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5179..5688)
DNA (510bp) protein (170aa)
Chemotaxis protein cheW n=2 Tax=Bradyrhizobium RepID=H0SPY4_9BRAD
CheW protein {ECO:0000313|EMBL:KFC73868.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cheW; chemotaxis protein CheW; K03408 purine-binding chemotaxis protein CheW
scnpilot_solids2_trim150_scaffold_678_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5691..7868)
DNA (2178bp) protein (726aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
CheA signal transduction histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
CheA signal transduction histidine kinase n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QNZ3_BRESC
scnpilot_solids2_trim150_scaffold_678_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7877..8236)
DNA (360bp) protein (120aa)
Response regulator receiver protein n=1 Tax=Citreicella sp. SE45 RepID=D0CZ88_9RHOB
Response regulator receiver protein {ECO:0000313|EMBL:KFC73870.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cheY4; chemotaxis protein CheY; K03413 two-component system, chemotaxis family, response regulator CheY
scnpilot_solids2_trim150_scaffold_678_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8242..8523)
DNA (282bp) protein (94aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC73871.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_678_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8670..9137)
DNA (468bp) protein (156aa)
Response regulator receiver protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8INI3_METNO
Response regulator receiver {ECO:0000313|EMBL:KFC73872.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
response regulator receiver protein
scnpilot_solids2_trim150_scaffold_678_curated_11
unknown

Not on your lists

9513..9971
DNA (459bp) protein (153aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_678_curated_12
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9968..10912)
DNA (945bp) protein (315aa)
RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M5G3_METRJ
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:ACB23554.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
scnpilot_solids2_trim150_scaffold_678_curated_13
unknown

Not on your lists

11571..11786
DNA (216bp) protein (72aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_678_curated_14
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11933..12184)
DNA (252bp) protein (84aa)
membrane protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000374F45E
Membrane protein {ECO:0000313|EMBL:KGE00689.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_678_curated_15
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12293..12583)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TP82_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE08270.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_678_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13037..13813)
DNA (777bp) protein (259aa)
Transcriptional regulator, IclR family n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FTM5_ACICJ
Transcriptional regulator, IclR family {ECO:0000313|EMBL:KFC73890.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
regulatory protein, IclR
scnpilot_solids2_trim150_scaffold_678_curated_17
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13957..15252
DNA (1296bp) protein (432aa)
Acetylornithine deacetylase {ECO:0000313|EMBL:ESR26937.1}; EC=3.5.1.16 {ECO:0000313|EMBL:ESR26937.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
acetylornithine deacetylase (EC:3.5.1.16); K01438 acetylornithine deacetylase [EC:3.5.1.16]
Acetylornithine deacetylase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4R4S7_9RHIZ
scnpilot_solids2_trim150_scaffold_678_curated_18
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15312..16556
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI0002F7330F
Putative binding-protein-dependent transport protein {ECO:0000313|EMBL:ESR26942.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
putative branched-chain amino acid transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_678_curated_19
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16642..17388
DNA (747bp) protein (249aa)
Branched-chain amino acid transport ATP-binding protein LivG n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TMH0_9RHIZ
Branched-chain amino acid transport ATP-binding protein LivG {ECO:0000313|EMBL:ESR26938.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
putative branched-chain amino acid ABC transporter, ATP-binding component (livG-like)
scnpilot_solids2_trim150_scaffold_678_curated_20
R_NC10_66_22, NC10, Bacteria

Not on your lists

17381..18100
DNA (720bp) protein (240aa)
Branched-chain amino acid transport ATP-binding protein LivF n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RNW4_9RHIZ
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
scnpilot_solids2_trim150_scaffold_678_curated_21
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18114..18989
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI00031E0792
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:ESR26940.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_678_curated_22
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19039..20022
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI000311B789
Branched-chain amino acid transport system permease protein LivM {ECO:0000313|EMBL:ESR26941.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_678_curated_23
Mesorhizobium sp. LSJC277A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20040..21329
DNA (1290bp) protein (430aa)
Acetylornithine deacetylase {ECO:0000313|EMBL:ESW64440.1}; EC=3.5.1.16 {ECO:0000313|EMBL:ESW64440.1};; TaxID=1287334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC277A00.;"
UPI0003CE59A9 related cluster n=1 Tax=unknown RepID=UPI0003CE59A9
acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
scnpilot_solids2_trim150_scaffold_678_curated_24
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21349..22578
DNA (1230bp) protein (410aa)
allantoate amidohydrolase (EC:3.5.1.87); K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87]
Amidase, hydantoinase/carbamoylase family n=2 Tax=Burkholderia multivorans RepID=B9BWL3_9BURK
Amidase, hydantoinase/carbamoylase family {ECO:0000313|EMBL:EEE04683.1}; TaxID=513052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD2.;"
scnpilot_solids2_trim150_scaffold_678_curated_25
Roseobacter sp. GAI101, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22766..24481)
DNA (1716bp) protein (572aa)
Gamma-glutamyltransferase {ECO:0000313|EMBL:EEB86025.1}; EC=2.3.2.2 {ECO:0000313|EMBL:EEB86025.1};; TaxID=391589 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. GAI101.;"
gamma-glutamyltranspeptidase, ACY1 bifunctional acylase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Gamma-glutamyltransferase n=1 Tax=Roseobacter sp. GAI101 RepID=B7RK31_9RHOB
scnpilot_solids2_trim150_scaffold_678_curated_26
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24635..26569
DNA (1935bp) protein (645aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4Z0F9_BRASO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL79635.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
scnpilot_solids2_trim150_scaffold_678_curated_27
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26630..28135)
DNA (1506bp) protein (502aa)
nitrite reductase, copper-containing protein (EC:1.7.2.1); K00368 nitrite reductase (NO-forming) [EC:1.7.2.1]
nitrite reductase n=1 Tax=Kaistia granuli RepID=UPI000378704A
Nitrite reductase, copper-containing protein {ECO:0000313|EMBL:EKF19280.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
scnpilot_solids2_trim150_scaffold_678_curated_28
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28363..28626
DNA (264bp) protein (88aa)
Elongation factor Tu n=1 Tax=Rhodovulum sp. PH10 RepID=J5PPS5_9RHOB
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
tuf; elongation factor Tu; K02358 elongation factor Tu
Displaying 28 items

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