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scnpilot_solids2_trim150_scaffold_1769_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1769_curated_1
unknown

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comp(1..111)
DNA (111bp) protein (37aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1769_curated_2
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(217..2082)
DNA (1866bp) protein (622aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D2C21E
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ44107.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
glycosyl transferase family protein
scnpilot_solids2_trim150_scaffold_1769_curated_3
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2298..3161
DNA (864bp) protein (288aa)
Extracellular solute-binding protein, family 3 n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WSK5_9BRAD
Extracellular solute-binding protein, family 3 {ECO:0000313|EMBL:EAQ37001.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
extracellular solute-binding protein
scnpilot_solids2_trim150_scaffold_1769_curated_4
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3261..5003
DNA (1743bp) protein (581aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
lysK; lysyl-tRNA synthetase (EC:6.1.1.6); K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6]
Lysine--tRNA ligase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXQ2_9RHIZ
scnpilot_solids2_trim150_scaffold_1769_curated_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5015..5638)
DNA (624bp) protein (208aa)
DNA-binding protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00035DB5B0
putative phage repressor
Putative phage repressor {ECO:0000313|EMBL:ABJ04676.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
scnpilot_solids2_trim150_scaffold_1769_curated_6
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5837..6199
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZLE1_METPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB80222.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
scnpilot_solids2_trim150_scaffold_1769_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6196..7266
DNA (1071bp) protein (357aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dihydroorotate dehydrogenase; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037805BA
scnpilot_solids2_trim150_scaffold_1769_curated_8
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7277..7552)
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00035E130E
Integrase {ECO:0000313|EMBL:KFG67065.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1769_curated_9
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7659..8612
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F2A9E4
Esterase/lipase {ECO:0000313|EMBL:EIM28738.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
alpha/beta hydrolase domain-containing protein
scnpilot_solids2_trim150_scaffold_1769_curated_10
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8666..9058)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037FB0EF
Signal peptide protein {ECO:0000313|EMBL:KGD86387.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1769_curated_11
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9141..9827)
DNA (687bp) protein (229aa)
Two component transcriptional regulator, LuxR family protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IXM2_POLGS
LuxR family two component transcriptional regulator
Two component transcriptional regulator, LuxR family protein {ECO:0000313|EMBL:ADZ71645.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_1769_curated_12
bacterium YEK0313, Bacteria

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comp(9975..11609)
DNA (1635bp) protein (545aa)
ATP dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
Putative ATP dependent DNA ligase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IK30_AZOC5
DNA ligase {ECO:0000313|EMBL:CEJ11335.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
scnpilot_solids2_trim150_scaffold_1769_curated_13
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11606..12625)
DNA (1020bp) protein (340aa)
beta-lactamase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00036BD7AB
putative mRNA 3-end processing factor; K07577 putative mRNA 3-end processing factor
Putative mRNA 3-end processing factor {ECO:0000313|EMBL:ACA15190.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_1769_curated_14
Fulvimarina pelagi, Fulvimarina, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12791..13087
DNA (297bp) protein (99aa)
DEAD-box ATP dependent DNA helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
Probable ATP dependent DNA helicase n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G5Q0_9RHIZ
Probable ATP dependent DNA helicase {ECO:0000313|EMBL:EAU43014.1}; TaxID=314231 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Fulvimarina.;" source="Fulvimarina pelagi HTCC2506.;"
Displaying 14 items

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