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scnpilot_solids2_trim150_scaffold_768_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_768_curated_1
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..2250)
DNA (2250bp) protein (750aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000362C9B2
double-strand break repair protein AddB
Double-strand break repair protein AddB {ECO:0000313|EMBL:ACA15054.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_768_curated_2
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2247..2975)
DNA (729bp) protein (243aa)
mannose-1-phosphate guanylyltransferase n=1 Tax=Methylobacterium sp. 88A RepID=UPI000366D3D1
Gcd1 protein {ECO:0000313|EMBL:BAQ46005.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
nucleotidyl transferase
scnpilot_solids2_trim150_scaffold_768_curated_3
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2982..4541)
DNA (1560bp) protein (520aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000370AB4A
hypothetical protein; K07102
Uncharacterized protein {ECO:0000313|EMBL:ACK49638.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
scnpilot_solids2_trim150_scaffold_768_curated_4
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4553..7084)
DNA (2532bp) protein (844aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E20D9D
PAS/PAC sensor signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_768_curated_5
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7472..8896)
DNA (1425bp) protein (475aa)
S-adenosylhomocysteine hydrolase; K01251 adenosylhomocysteinase [EC:3.3.1.1]
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
S-adenosyl-L-homocysteine hydrolase n=1 Tax=Afipia birgiae RepID=UPI0002D875C8
scnpilot_solids2_trim150_scaffold_768_curated_6
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9011..9364)
DNA (354bp) protein (118aa)
Membrane protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JE26_OLICO
putative transmembrane protein; K09790 hypothetical protein
Putative transmembrane protein {ECO:0000313|EMBL:AEI06230.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_768_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9384..9647)
DNA (264bp) protein (88aa)
Phosphocarrier, HPr family n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ENZ3_METSB
HPr family phosphocarrier {ECO:0000313|EMBL:KFC70730.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
HPr family phosphocarrier protein; K11189 phosphocarrier protein
scnpilot_solids2_trim150_scaffold_768_curated_8
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9722..10123)
DNA (402bp) protein (134aa)
PTS system fructose subfamily IIA component; K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69]
PTS system fructose subfamily IIA component n=5 Tax=Methylobacterium extorquens RepID=A9W231_METEP
PTS fructose transporter subunit IIA {ECO:0000313|EMBL:KFG67978.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
scnpilot_solids2_trim150_scaffold_768_curated_9
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10170..10667)
DNA (498bp) protein (166aa)
aldolase n=1 Tax=Methylocystis rosea RepID=UPI000368487F
HPr kinase
HPr kinase {ECO:0000313|EMBL:CCJ06744.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
scnpilot_solids2_trim150_scaffold_768_curated_10
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10693..12507)
DNA (1815bp) protein (605aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
histidine kinase; K14980 two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030376AA
scnpilot_solids2_trim150_scaffold_768_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12533..13231)
DNA (699bp) protein (233aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q873_METSZ
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:KFC70734.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
two component transcriptional regulator, winged helix family
scnpilot_solids2_trim150_scaffold_768_curated_12
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13351..14100
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003739DC7
Pyridoxamine 5'-phosphate oxidase-like FMN-binding protein {ECO:0000313|EMBL:EIM73262.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein; K07226 hypothetical protein
scnpilot_solids2_trim150_scaffold_768_curated_13
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14303..15916
DNA (1614bp) protein (538aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
phosphoenolpyruvate carboxykinase (EC:4.1.1.49); K01610 phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYK3_9RHIZ
scnpilot_solids2_trim150_scaffold_768_curated_14
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16271..17734)
DNA (1464bp) protein (488aa)
Na+/H+ antiporter NhaD-like permease n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSJ9_9RHIZ
Na+/H+ antiporter NhaD-like permease {ECO:0000313|EMBL:EIM26941.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
transporter
scnpilot_solids2_trim150_scaffold_768_curated_15
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17888..18121
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLY8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EFH11683.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
glutamine amidotransferase; K07008 glutamine amidotransferase
scnpilot_solids2_trim150_scaffold_768_curated_16
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18215..18679
DNA (465bp) protein (155aa)
Glutamine amidotransferase class-II n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ING8_METNO
glutamine amidotransferase; K07008 glutamine amidotransferase
Glutamine amidotransferase class-II {ECO:0000313|EMBL:ACL56494.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_768_curated_17
Desulfovibrio desulfuricans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18684..19094)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) RepID=B8J307_DESDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL48144.1}; TaxID=525146 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949).;"
scnpilot_solids2_trim150_scaffold_768_curated_18
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19228..20169
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000372BEAA
Putative uncharacterized protein {ECO:0000313|EMBL:EHK56647.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_768_curated_19
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20337..21377
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036AB298
Uncharacterized protein {ECO:0000313|EMBL:ESR25505.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
acyltransferase family protein
scnpilot_solids2_trim150_scaffold_768_curated_20
bacterium YEK0313, Bacteria

Not on your lists

21426..24491
DNA (3066bp) protein (1022aa)
DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7]
DNA polymerase I n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ESM1_METSB
DNA polymerase I {ECO:0000313|EMBL:CEJ15793.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
scnpilot_solids2_trim150_scaffold_768_curated_21
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24558..25844)
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000378AFF6
peptidase M16 domain-containing protein
Peptidase M16 domain protein {ECO:0000313|EMBL:ACB94653.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
scnpilot_solids2_trim150_scaffold_768_curated_22
unknown

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comp(25841..25945)
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 22 items

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