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scnpilot_solids2_trim150_scaffold_848_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_848_curated_1
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1039
DNA (1038bp) protein (346aa)
metH; B12-dependent methionine synthase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVF0_9RHIZ
5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:EIM27942.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
scnpilot_solids2_trim150_scaffold_848_curated_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1061..2533)
DNA (1473bp) protein (491aa)
AMP nucleosidase {ECO:0000256|HAMAP-Rule:MF_01932}; EC=3.2.2.4 {ECO:0000256|HAMAP-Rule:MF_01932};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
AMP nucleosidase; K01241 AMP nucleosidase [EC:3.2.2.4]
AMP nucleosidase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVE7_9RHIZ
scnpilot_solids2_trim150_scaffold_848_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2530..3186)
DNA (657bp) protein (219aa)
Putative membrane protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZC9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC69388.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_848_curated_4
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3294..4139)
DNA (846bp) protein (282aa)
Outer membrane transport energization protein TonB n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SUS0_NITWN
TonB protein; K03832 periplasmic protein TonB
Outer membrane transport energization protein TonB {ECO:0000313|EMBL:ABA05297.1}; TonB protein {ECO:0000313|EMBL:ABA03971.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
scnpilot_solids2_trim150_scaffold_848_curated_5
bacterium YEK0313, Bacteria

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comp(4136..4600)
DNA (465bp) protein (155aa)
Outer membrane transport energization protein ExbD n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SUS1_NITWN
Biopolymer transport protein ExbD {ECO:0000313|EMBL:CEJ14837.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD
scnpilot_solids2_trim150_scaffold_848_curated_6
bacterium YEK0313, Bacteria

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comp(4606..5481)
DNA (876bp) protein (292aa)
Outer membrane transport energization protein ExbB n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ67_NITHX
Biopolymer transport protein ExbB {ECO:0000313|EMBL:CEJ14838.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB
scnpilot_solids2_trim150_scaffold_848_curated_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5799..6227
DNA (429bp) protein (143aa)
Rrf2 family protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2H0_9BRAD
Rrf2 family protein {ECO:0000313|EMBL:EKS36737.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
scnpilot_solids2_trim150_scaffold_848_curated_8
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(6234..7058)
DNA (825bp) protein (275aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037CFECB
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ABQ92797.1}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
scnpilot_solids2_trim150_scaffold_848_curated_9
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7075..7446)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E50951
Uncharacterized protein {ECO:0000313|EMBL:CDX53622.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_848_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7590..9797
DNA (2208bp) protein (736aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037C56BC
primosomal protein N'
scnpilot_solids2_trim150_scaffold_848_curated_11
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10025..10588
DNA (564bp) protein (188aa)
ATP synthase F0F1 subunit delta (EC:3.6.3.14); K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]
ATP synthase subunit delta n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HC30_9BRAD
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
scnpilot_solids2_trim150_scaffold_848_curated_12
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10588..12117
DNA (1530bp) protein (510aa)
F0F1 ATP synthase subunit alpha (EC:3.4.21.68); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
F0F1 ATP synthase subunit alpha n=1 Tax=Methylocystis parvus RepID=UPI0002D5E34E
scnpilot_solids2_trim150_scaffold_848_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12184..13050
DNA (867bp) protein (289aa)
F0F1 ATP synthase subunit gamma; K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14]
ATP synthase gamma chain n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMJ5_9RHIZ
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_848_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13072..14535
DNA (1464bp) protein (488aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
atpD; ATP synthase F1 subunit beta; K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14]
ATP synthase subunit beta n=49 Tax=Rhizobiales RepID=G9A1Q4_RHIFH
scnpilot_solids2_trim150_scaffold_848_curated_15
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14685..15089
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E18B17
atpC; ATP synthase subunit epsilon
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530, ECO:0000313|EMBL:CCJ08780.1}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
scnpilot_solids2_trim150_scaffold_848_curated_16
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15371..18493)
DNA (3123bp) protein (1041aa)
bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; K13821 proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.99.8 1.5.1.12]
Delta-1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMJ1_9RHIZ
Delta-1-pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:EIM25183.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
scnpilot_solids2_trim150_scaffold_848_curated_17
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18622..19083
DNA (462bp) protein (154aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMJ0_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EIM25182.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
AsnC family transcriptional regulator; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
scnpilot_solids2_trim150_scaffold_848_curated_18
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19262..20497)
DNA (1236bp) protein (412aa)
tdcB; K01754 threonine dehydratase [EC:4.3.1.19]
threonine dehydratase n=1 Tax=Acinetobacter sp. GG2 RepID=UPI0002DCF869
Threonine dehydratase {ECO:0000313|EMBL:KHO17330.1}; TaxID=470 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" source="Acinetobacter baumannii.;"
scnpilot_solids2_trim150_scaffold_848_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20497..21327)
DNA (831bp) protein (277aa)
ABC transporter, permease protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A6Q6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KFC66541.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative permease component of ABC transporter; K02026 multiple sugar transport system permease protein
scnpilot_solids2_trim150_scaffold_848_curated_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21327..22259)
DNA (933bp) protein (311aa)
Permease component of ABC-type sugar transporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYD9_9RHIZ
Permease component of ABC-type sugar transporter {ECO:0000313|EMBL:KFC66542.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter permease; K02025 multiple sugar transport system permease protein
scnpilot_solids2_trim150_scaffold_848_curated_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22295..23662)
DNA (1368bp) protein (456aa)
ABC transporter, solute-binding protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RSN5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KFC66543.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
family 1 extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_848_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23875..24444)
DNA (570bp) protein (190aa)
elongation factor P n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000310860C
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
elongation factor P; K02356 elongation factor P
Displaying 22 items

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