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scnpilot_solids2_trim150_scaffold_1778_curated

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1778_curated_1
unknown

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1..105
DNA (105bp) protein (35aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1778_curated_2
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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300..1430
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E6739F
FAD dependent oxidoreductase {ECO:0000313|EMBL:GAN78131.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
oxidoreductase
scnpilot_solids2_trim150_scaffold_1778_curated_3
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1829..2635)
DNA (807bp) protein (269aa)
HpcH/HpaI aldolase; K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]
HpcH/HpaI aldolase n=1 Tax=Citreicella sp. 357 RepID=I1ATZ8_9RHOB
Aldolase {ECO:0000313|EMBL:KHJ54852.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
scnpilot_solids2_trim150_scaffold_1778_curated_4
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2682..3512)
DNA (831bp) protein (277aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B9I4_PARDP
L-carnitine dehydratase/bile acid-inducible protein F
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ABL72178.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
scnpilot_solids2_trim150_scaffold_1778_curated_5
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3782..4942)
DNA (1161bp) protein (387aa)
Acyl-CoA dehydrogenase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IAH5_AZOC5
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:BAF88507.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
scnpilot_solids2_trim150_scaffold_1778_curated_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5014..5769)
DNA (756bp) protein (252aa)
GntR family transcriptional regulator n=1 Tax=Pseudomonas stutzeri KOS6 RepID=K6BTE1_PSEST
GntR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
scnpilot_solids2_trim150_scaffold_1778_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6106..6768
DNA (663bp) protein (221aa)
Transcriptional regulator, GntR family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D1S3_VARPS
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ACS22843.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
scnpilot_solids2_trim150_scaffold_1778_curated_8
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6878..8161
DNA (1284bp) protein (428aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:ADH91337.1}; EC=1.1.1.85 {ECO:0000313|EMBL:ADH91337.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
3-isopropylmalate dehydrogenase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0L6_STAND
scnpilot_solids2_trim150_scaffold_1778_curated_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8163..9038
DNA (876bp) protein (292aa)
Amidohydrolase 2 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IVL2_METNO
amidohydrolase 2
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
scnpilot_solids2_trim150_scaffold_1778_curated_10
RLO_PLX_64_10, Bacteria

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9086..10123
DNA (1038bp) protein (346aa)
pld3; pyridoxal4-dehydrogenase Pld (EC:1.1.1.107)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037B1BA1
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
scnpilot_solids2_trim150_scaffold_1778_curated_11

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10218..11210
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CZV9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD98545.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
TRAP dicarboxylate transporter subunit Dctp
scnpilot_solids2_trim150_scaffold_1778_curated_12

Not on your lists

11293..11832
DNA (540bp) protein (180aa)
Tripartite ATP-independent periplasmic transporter DctQ n=1 Tax=uncultured bacterium RepID=K2DMR3_9BACT
Tripartite ATP-independent periplasmic transporter DctQ {ECO:0000313|EMBL:EKD98546.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
TRAP dicarboxylate transporter protein DctQ subunit
scnpilot_solids2_trim150_scaffold_1778_curated_13
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11829..13085
DNA (1257bp) protein (419aa)
membrane protein n=1 Tax=Chryseobacterium taeanense RepID=UPI0002EA3184
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:EZP58132.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
TRAP dicarboxylate transporter subunit DctM
scnpilot_solids2_trim150_scaffold_1778_curated_14
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13126..13893
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037845B0
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABS66387.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_solids2_trim150_scaffold_1778_curated_15
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13918..14541)
DNA (624bp) protein (208aa)
GntR family transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MT38_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGM31753.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
GntR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_1778_curated_16
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14930..15751
DNA (822bp) protein (274aa)
hydrolase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395C809
Poly(Aspartic acid) hydrolase {ECO:0000313|EMBL:EJO29871.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
poly(aspartic acid) hydrolase
scnpilot_solids2_trim150_scaffold_1778_curated_17
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15869..16999
DNA (1131bp) protein (377aa)
ABC transporter, solute-binding protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZW79_9PROT
Putative iron ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AHK46274.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein; K02012 iron(III) transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_1778_curated_18
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17072..18802
DNA (1731bp) protein (577aa)
Ferric iron ABC transporter, permease protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RWK5_9RHIZ
Ferric iron ABC transporter, permease protein {ECO:0000313|EMBL:ESR27375.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
hypothetical protein; K02011 iron(III) transport system permease protein
scnpilot_solids2_trim150_scaffold_1778_curated_19
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18795..19910
DNA (1116bp) protein (372aa)
hypothetical protein; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30]
ABC transporter, ATP-binding protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZW77_9PROT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGM34521.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
scnpilot_solids2_trim150_scaffold_1778_curated_20
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19900..21102
DNA (1203bp) protein (401aa)
Citryl-CoA lyase (EC:4.1.3.34)
III protein, CoA-transferase family n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MPU2_9BURK
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
scnpilot_solids2_trim150_scaffold_1778_curated_21
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21112..22017
DNA (906bp) protein (302aa)
hypothetical protein; K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]
HpcH/HpaI aldolase/citrate lyase family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZW75_9PROT
HpcH/HpaI aldolase/citrate lyase family protein {ECO:0000313|EMBL:EHM02718.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
scnpilot_solids2_trim150_scaffold_1778_curated_22
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22056..23765)
DNA (1710bp) protein (570aa)
2-methylcitrate dehydratase (EC:4.2.1.79); K01720 2-methylcitrate dehydratase [EC:4.2.1.79]
2-methylcitrate dehydratase n=1 Tax=Nitratireductor indicus C115 RepID=K2N1U3_9RHIZ
2-methylcitrate dehydratase {ECO:0000313|EMBL:EKF41448.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
scnpilot_solids2_trim150_scaffold_1778_curated_23
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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24029..25738
DNA (1710bp) protein (570aa)
kdpA; potassium-transporting ATPase subunit A (EC:3.6.3.12); K01546 K+-transporting ATPase ATPase A chain [EC:3.6.3.12]
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=1415161 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsula
ATPase n=1 Tax=Rhodobacter capsulatus B6 RepID=V8GVS0_RHOCA
scnpilot_solids2_trim150_scaffold_1778_curated_24
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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25758..27812
DNA (2055bp) protein (685aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" sour
K+-transporting ATPase subunit B (EC:3.6.3.4); K01547 K+-transporting ATPase ATPase B chain [EC:3.6.3.12]
Potassium-transporting ATPase B chain n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FSR0_RHIML
scnpilot_solids2_trim150_scaffold_1778_curated_25
bacterium YEK0313, Bacteria

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27826..28431
DNA (606bp) protein (202aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
potassium-transporting ATPase subunit C; K01548 K+-transporting ATPase ATPase C chain [EC:3.6.3.12]
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036EA9AA
scnpilot_solids2_trim150_scaffold_1778_curated_26
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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28447..30207
DNA (1761bp) protein (587aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
Osmosensitive K+ channel histidine kinase (EC:2.7.13.3)
histidine kinase n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037976DC
Displaying 26 items

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