ggKbase home page

scnpilot_solids2_trim150_scaffold_501_curated

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_501_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..445)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036B336F
Putative Succinylglutamate desuccinylase/aspartoacylase {ECO:0000313|EMBL:KFC65318.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
succinylglutamate desuccinylase/aspartoacylase; K06987
scnpilot_solids2_trim150_scaffold_501_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(537..1736)
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Actinopolyspora halophila RepID=UPI0003726EC0
SoxB protein {ECO:0000313|EMBL:KFC65319.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FAD dependent oxidoreductase
scnpilot_solids2_trim150_scaffold_501_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1750..2814)
DNA (1065bp) protein (355aa)
Oligopeptide ABC transporter, ATP-binding protein AppF n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A2N0_9PROT
Oligopeptide/dipeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KFC65320.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
oligopeptide/dipeptide ABC transporter ATPase; K02032 peptide/nickel transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_501_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2811..3647)
DNA (837bp) protein (279aa)
Glutathione import ATP-binding protein GsiA {ECO:0000313|EMBL:KFC65321.1}; EC=3.6.3.- {ECO:0000313|EMBL:KFC65321.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Oligopeptide/dipeptide ABC transporter, ATP-binding protein n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=D9XPA8_9ACTO
oligopeptide/dipeptide ABC transporter ATPase subunit; K02031 peptide/nickel transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_501_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3599..4783)
DNA (1185bp) protein (395aa)
Glutathione import ATP-binding protein GsiA {ECO:0000313|EMBL:KFC65321.1}; EC=3.6.3.- {ECO:0000313|EMBL:KFC65321.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Geobacillus sp. (strain Y412MC10) RepID=D3EAI6_GEOS4
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein
scnpilot_solids2_trim150_scaffold_501_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4780..5703)
DNA (924bp) protein (308aa)
Peptide ABC transporter, permease protein n=1 Tax=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) RepID=Q5SIN2_THET8
Putative peptide transporter permease subunit: membrane component of ABC superfamily protein {ECO:0000313|EMBL:KFC65322.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
peptide ABC transporter permease; K02033 peptide/nickel transport system permease protein
scnpilot_solids2_trim150_scaffold_501_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5727..7253)
DNA (1527bp) protein (509aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Thermus oshimai JL-2 RepID=K7QVZ7_THEOS
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFC65323.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC-type dipeptide transport system, periplasmic component
scnpilot_solids2_trim150_scaffold_501_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7444..8370
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F1BDA9
AraC family transcriptional regulator {ECO:0000313|EMBL:KFC65324.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
LysR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_501_curated_9
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8620..9480
DNA (861bp) protein (287aa)
Glycosyl transferase, family 2 n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TNW3_ACIAC
glycosyl transferase family protein
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABM32651.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_solids2_trim150_scaffold_501_curated_10
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9482..10660
DNA (1179bp) protein (393aa)
Putative uncharacterized protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TNW2_ACIAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM32650.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_solids2_trim150_scaffold_501_curated_11
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10663..11577
DNA (915bp) protein (305aa)
Glycosyltransferase sugar-binding region containing DXD motif n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TNW1_ACIAC
glycosyl transferase family protein
Glycosyltransferase sugar-binding region containing DXD motif {ECO:0000313|EMBL:ABM32649.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_solids2_trim150_scaffold_501_curated_12
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11574..13322
DNA (1749bp) protein (583aa)
ABC transporter-related protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TNW0_ACIAC
ABC transporter-like protein
ABC transporter-related protein {ECO:0000313|EMBL:ABM32648.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_solids2_trim150_scaffold_501_curated_13
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13319..14518
DNA (1200bp) protein (400aa)
Glycosyl transferase, group 1 n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TNV9_ACIAC
group 1 glycosyl transferase
Glycosyl transferase, group 1 {ECO:0000313|EMBL:ABM32647.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_solids2_trim150_scaffold_501_curated_14
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14519..15634
DNA (1116bp) protein (372aa)
group 1 glycosyl transferase n=1 Tax=Pseudomonas fuscovaginae RepID=UPI0002889A57
group 1 glycosyl transferase
Uncharacterized protein {ECO:0000313|EMBL:EPD46126.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
scnpilot_solids2_trim150_scaffold_501_curated_15
Yersinia mollaretii, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15645..16796
DNA (1152bp) protein (384aa)
group 1 glycosyl transferase; K12995 rhamnosyltransferase [EC:2.4.1.-]
Glycosyl transferase WbpZ n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4S7I1_YERMO
Glycosyl transferase WbpZ {ECO:0000313|EMBL:EEQ12381.1}; TaxID=349967 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia mollaretii ATCC 43969.;"
scnpilot_solids2_trim150_scaffold_501_curated_16
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16843..18093)
DNA (1251bp) protein (417aa)
Allantoate amidohydrolase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TTV1_TISMK
ArgE protein {ECO:0000313|EMBL:BAQ49991.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
allC; allantoate amidohydrolase
scnpilot_solids2_trim150_scaffold_501_curated_17
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18096..18977)
DNA (882bp) protein (294aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z122_9RHIZ
MhpC protein {ECO:0000313|EMBL:BAQ49990.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
alpha/beta hydrolase family protein
scnpilot_solids2_trim150_scaffold_501_curated_18
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18989..19771)
DNA (783bp) protein (261aa)
Short chain dehydrogenase n=1 Tax=Nitratireductor indicus C115 RepID=K2PG18_9RHIZ
FabG protein {ECO:0000313|EMBL:BAQ49989.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
short chain dehydrogenase
scnpilot_solids2_trim150_scaffold_501_curated_19
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19815..20948)
DNA (1134bp) protein (378aa)
Aspartate aminotransferase n=1 Tax=Nitratireductor indicus C115 RepID=K2NY19_9RHIZ
Methylobacterium aquaticum plasmid pMaq22A_2p DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ49988.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
aspartate aminotransferase
scnpilot_solids2_trim150_scaffold_501_curated_20
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21183..22274
DNA (1092bp) protein (364aa)
ABC transporter substrate binding protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IKF0_AZOC5
Methylobacterium aquaticum plasmid pMaq22A_2p DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ49987.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_501_curated_21
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22287..23204
DNA (918bp) protein (306aa)
TauB protein {ECO:0000313|EMBL:BAQ49986.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
ABC transporter ATP-binding protein id=3138543 bin=GWC2_Methylomirabilis_70_24 species=Azorhizobium caulinodans genus=Azorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_501_curated_22
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23213..24043
DNA (831bp) protein (277aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Isoptericola variabilis (strain 225) RepID=F6FT88_ISOV2
Methylobacterium aquaticum plasmid pMaq22A_2p DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ49985.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
ABC transporter; K02050 NitT/TauT family transport system permease protein
scnpilot_solids2_trim150_scaffold_501_curated_23
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24057..24770
DNA (714bp) protein (238aa)
Transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2PG13_9RHIZ
GntR protein {ECO:0000313|EMBL:BAQ49984.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_501_curated_24
unknown

Not on your lists

comp(24578..25222)
DNA (645bp) protein (215aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_501_curated_25
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25264..26127
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00035C14A1
conserved hypothetical protein; putative signal peptide
Uncharacterized protein {ECO:0000313|EMBL:CCC97069.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
scnpilot_solids2_trim150_scaffold_501_curated_26
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26392..27060)
DNA (669bp) protein (223aa)
NAD(P)H dehydrogenase, quinone family, Nqo1-like {ECO:0000313|EMBL:CCE97023.1}; EC=1.6.5.2 {ECO:0000313|EMBL:CCE97023.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
NAD(P)H dehydrogenase, quinone family, Nqo1-like n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AAB9_RHIFH
NAD(P)H dehydrogenase, quinone family, Nqo1-like
scnpilot_solids2_trim150_scaffold_501_curated_27
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27310..28296
DNA (987bp) protein (329aa)
D-isomer specific 2-hydroxyacid dehydrogenase family protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EIA0_9RHIZ
D-isomer specific 2-hydroxyacid dehydrogenase family protein {ECO:0000313|EMBL:CCV03995.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
D-isomer specific 2-hydroxyacid dehydrogenase
scnpilot_solids2_trim150_scaffold_501_curated_28
Burkholderia caribensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28309..29607)
DNA (1299bp) protein (433aa)
UPI0003CEA6B3 related cluster n=1 Tax=unknown RepID=UPI0003CEA6B3
Oxidoreductase {ECO:0000313|EMBL:ETY84168.1}; TaxID=1323664 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia caribensis MBA4.;"
FAD dependent oxidoreductase
scnpilot_solids2_trim150_scaffold_501_curated_29
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29663..31090)
DNA (1428bp) protein (476aa)
hypothetical protein; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
aldehyde dehydrogenase n=1 Tax=Nocardia sp. BMG111209 RepID=UPI00035D1EF5
Uncharacterized protein {ECO:0000313|EMBL:AHY51439.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
scnpilot_solids2_trim150_scaffold_501_curated_30
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31476..33575
DNA (2100bp) protein (700aa)
5-oxoprolinase (EC:3.5.2.14); K01473 N-methylhydantoinase A [EC:3.5.2.14]
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13QZ5_BURXL
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Displaying items 1-30 of 36 in total

View Taxonomy