ggKbase home page

scnpilot_solids2_trim150_scaffold_1351_curated

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1351_curated_1
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..114)
DNA (114bp) protein (38aa)
Extracellular solute-binding protein family 3 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UJK9_METS4
TauA protein {ECO:0000313|EMBL:BAQ43748.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
extracellular solute-binding protein; K02051 NitT/TauT family transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_1351_curated_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(671..1675)
DNA (1005bp) protein (335aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVR7_9RHIZ
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:EIM28059.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
family 3 extracellular solute-binding protein; K02051 NitT/TauT family transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_1351_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1728..2522)
DNA (795bp) protein (265aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UJL0_METS4
TauC protein {ECO:0000313|EMBL:KFC67059.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein
scnpilot_solids2_trim150_scaffold_1351_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2519..3367)
DNA (849bp) protein (283aa)
Putative ABC-transporter (ATP-binding protein) {ECO:0000313|EMBL:KFC67058.1}; EC=3.6.3.- {ECO:0000313|EMBL:KFC67058.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
mannosyltransferase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00035E3639
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_1351_curated_5
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3517..4263
DNA (747bp) protein (249aa)
membrane protein n=1 Tax=Janthinobacterium lividum RepID=UPI000289FA7A
Putative Membrane protein {ECO:0000313|EMBL:EZP40862.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
hypothetical protein; K07090
scnpilot_solids2_trim150_scaffold_1351_curated_6
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4381..5400)
DNA (1020bp) protein (340aa)
ketol-acid reductoisomerase; K00053 ketol-acid reductoisomerase [EC:1.1.1.86]
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ketol-acid reductoisomerase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037FBFF7
scnpilot_solids2_trim150_scaffold_1351_curated_7
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5425..6075)
DNA (651bp) protein (217aa)
Putative transcriptional regulator n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EUH2_9RHIZ
Putative transcriptional regulator {ECO:0000313|EMBL:CCV07680.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_1351_curated_8
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6154..6717)
DNA (564bp) protein (188aa)
Transporter, LysE family n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XTW7_ALCXX
Transporter, LysE family
Transporter, LysE family {ECO:0000313|EMBL:CCH05373.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
scnpilot_solids2_trim150_scaffold_1351_curated_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6761..7366
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030FDD16
Uncharacterized protein {ECO:0000313|EMBL:EJL79985.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1351_curated_10
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7369..7611)
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000366B571
Uncharacterized protein {ECO:0000313|EMBL:AKF85276.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1351_curated_11
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7752..8285)
DNA (534bp) protein (178aa)
acetolactate synthase small subunit; K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6]
Acetolactate synthase, small subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVQ8_9RHIZ
Acetolactate synthase {ECO:0000313|EMBL:KFG69080.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
scnpilot_solids2_trim150_scaffold_1351_curated_12
bacterium YEK0313, Bacteria

Not on your lists

comp(8349..10136)
DNA (1788bp) protein (596aa)
acetolactate synthase large subunit; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
acetolactate synthase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000318F348
Acetolactate synthase isozyme 3 large subunit {ECO:0000313|EMBL:CEJ10453.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
scnpilot_solids2_trim150_scaffold_1351_curated_13
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10401..11318)
DNA (918bp) protein (306aa)
tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75); K00791 tRNA dimethylallyltransferase [EC:2.5.1.75]
tRNA dimethylallyltransferase {ECO:0000255|HAMAP-Rule:MF_00185}; EC=2.5.1.75 {ECO:0000255|HAMAP-Rule:MF_00185};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000255|HAMAP-Rule:MF_00185}; Short=DMAPP:tRNA dimethylallyltransferase {ECO:0000255|HAMAP-Rule:MF_00185};; Short=DMATase {ECO:0000255|HAMAP-Rule:MF_00185};; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000255|HAMAP-Rule:MF_00185}; Short=IPP transferase {ECO:0000255|HAMAP-Rule:MF_00185};; Short=IPPT {ECO:0000255|HAMAP-Rule:
tRNA dimethylallyltransferase n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=MIAA_METSB
scnpilot_solids2_trim150_scaffold_1351_curated_14
bacterium YEK0313, Bacteria

Not on your lists

11330..12226
DNA (897bp) protein (299aa)
phosphoserine phosphatase SerB (EC:3.1.3.3); K01079 phosphoserine phosphatase [EC:3.1.3.3]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000317DFA2
Phosphoserine phosphatase {ECO:0000313|EMBL:CEJ09778.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
scnpilot_solids2_trim150_scaffold_1351_curated_15
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12450..13928)
DNA (1479bp) protein (493aa)
protease Do (EC:3.4.21.107)
Periplasmic serine protease, Do/DeqQ family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVQ1_9RHIZ
Periplasmic serine protease, Do/DeqQ family {ECO:0000313|EMBL:EIM28043.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
scnpilot_solids2_trim150_scaffold_1351_curated_16
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14073..14267)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UDC9_METS4
hypothetical protein; K09937 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA15615.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_1351_curated_17
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14278..15225)
DNA (948bp) protein (316aa)
HflC protein; K04087 membrane protease subunit HflC [EC:3.4.-.-]
Protein HflC n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A7E8_STAND
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_1351_curated_18
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15242..16384)
DNA (1143bp) protein (381aa)
HflK protein; K04088 membrane protease subunit HflK [EC:3.4.-.-]
HflK protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QS00_METTR
HflK protein {ECO:0000313|EMBL:ADH90378.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_1351_curated_19

Not on your lists

comp(16488..16682)
DNA (195bp) protein (65aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
dihydrofolate reductase (EC:1.5.1.3); K00287 dihydrofolate reductase [EC:1.5.1.3]
diacylglycerol kinase n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00034A8C4C
Displaying 19 items

View Taxonomy