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scnpilot_solids2_trim150_scaffold_1049_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1049_curated_1
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1001
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RYQ7_9BRAD
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
scnpilot_solids2_trim150_scaffold_1049_curated_2
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1135..1617)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI000371352C
Uncharacterized protein {ECO:0000313|EMBL:KAI94147.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1049_curated_3
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1727..1990)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003023B03
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJC36753.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
scnpilot_solids2_trim150_scaffold_1049_curated_4
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2140..2607)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UBG3_METS4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA16559.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_1049_curated_5
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2604..3008)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031A5158
NUDIX hydrolase {ECO:0000313|EMBL:KFG69809.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
ADP-ribose phosphohydrolase
scnpilot_solids2_trim150_scaffold_1049_curated_6
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3137..3982
DNA (846bp) protein (282aa)
Folate-binding protein YgfZ n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQ71_9RHIZ
Folate-binding protein YgfZ {ECO:0000313|EMBL:EIM26113.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
gcvT; glycine cleavage system T protein; K06980
scnpilot_solids2_trim150_scaffold_1049_curated_7
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3986..4705)
DNA (720bp) protein (240aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SV60_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA03831.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
scnpilot_solids2_trim150_scaffold_1049_curated_8
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4796..5356
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI000364BC6E
MarR family transcriptional regulator {ECO:0000313|EMBL:EKF19139.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
MarR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_1049_curated_9
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5461..6381
DNA (921bp) protein (307aa)
Pirin n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B2R0_9RHIZ
pirin
Pirin {ECO:0000313|EMBL:AGK57814.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
scnpilot_solids2_trim150_scaffold_1049_curated_10
unknown

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6427..6621
DNA (195bp) protein (65aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1049_curated_11
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6558..6884)
DNA (327bp) protein (109aa)
Putative transmembrane protein n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q472R1_CUPPJ
transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:AAZ60622.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
scnpilot_solids2_trim150_scaffold_1049_curated_12
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7049..8962
DNA (1914bp) protein (638aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7); K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E6732F
scnpilot_solids2_trim150_scaffold_1049_curated_13
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9045..9827)
DNA (783bp) protein (261aa)
Putative low-complexity protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWL1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFG70187.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
BTB/POZ domain-containing protein KCTD9
scnpilot_solids2_trim150_scaffold_1049_curated_14
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10002..10733
DNA (732bp) protein (244aa)
hemolysin n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A7FF
hemolysin A
Hemolysin A {ECO:0000313|EMBL:AGH50526.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
scnpilot_solids2_trim150_scaffold_1049_curated_15
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10730..11968
DNA (1239bp) protein (413aa)
(uracil-5)-methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
(Uracil-5)-methyltransferase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A3S4_STAND
(Uracil-5)-methyltransferase {ECO:0000313|EMBL:ADH91701.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_1049_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11958..12593)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQ58_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC73373.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1049_curated_17
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12639..13505)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQ56_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM26098.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
short-chain dehydrogenase/reductase SDR; K13775 citronellol/citronellal dehydrogenase
scnpilot_solids2_trim150_scaffold_1049_curated_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13519..14265)
DNA (747bp) protein (249aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:ABD09138.1}; EC=4.2.1.17 {ECO:0000313|EMBL:ABD09138.1};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
Enoyl-CoA hydratase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IRM2_RHOP2
enoyl-CoA hydratase/isomerase
scnpilot_solids2_trim150_scaffold_1049_curated_19
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14285..16075)
DNA (1791bp) protein (597aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000369A0AD
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KFG69788.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
acyl-CoA dehydrogenase domain-containing protein
scnpilot_solids2_trim150_scaffold_1049_curated_20
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16186..17163
DNA (978bp) protein (326aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
Sua5/YciO/YrdC/YwlC family protein n=2 Tax=Methylobacterium extorquens RepID=A9W8X6_METEP
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
scnpilot_solids2_trim150_scaffold_1049_curated_21
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17323..18213
DNA (891bp) protein (297aa)
Transcriptional regulator n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HU67_AZOC5
lysR; transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAF86910.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
scnpilot_solids2_trim150_scaffold_1049_curated_22
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18382..19365)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EBB618
Putative quinone oxidoreductase, YhdH/YhfP family {ECO:0000313|EMBL:EIM26093.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
quinone oxidoreductase
scnpilot_solids2_trim150_scaffold_1049_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19482..20075)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D505_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC73390.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
peptidoglycan-binding domain 1 protein
scnpilot_solids2_trim150_scaffold_1049_curated_24
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20504..20638)
DNA (135bp) protein (45aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F0027F
Cell wall hydrolyses involved in spore germination {ECO:0000313|EMBL:EIM26090.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
cell wall hydrolase SleB
Displaying 24 items

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