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scnpilot_solids2_trim150_scaffold_2368_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2368_curated_1
R_NC10_66_22, NC10, Bacteria

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comp(1..771)
DNA (771bp) protein (257aa)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
scnpilot_solids2_trim150_scaffold_2368_curated_2
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1138..2133
DNA (996bp) protein (332aa)
Transcriptional regulator, LysR family n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IPH2_XANP2
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABS69918.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_solids2_trim150_scaffold_2368_curated_3
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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2267..3487
DNA (1221bp) protein (407aa)
Major facilitator superfamily (MFS_1) transporter n=1 Tax=alpha proteobacterium BAL199 RepID=A8TN11_9PROT
Major facilitator superfamily (MFS_1) transporter {ECO:0000313|EMBL:EDP65959.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
major facilitator superfamily protein; K08223 MFS transporter, FSR family, fosmidomycin resistance protein
scnpilot_solids2_trim150_scaffold_2368_curated_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3503..3838)
DNA (336bp) protein (112aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Alkylhydroperoxidase AhpD core n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFU5_NITHX
alkylhydroperoxidase AhpD core
scnpilot_solids2_trim150_scaffold_2368_curated_5
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3952..4158)
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000369BE8E
Uncharacterized protein {ECO:0000313|EMBL:BAR62552.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2368_curated_6
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4327..4587
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B579_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK58158.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
scnpilot_solids2_trim150_scaffold_2368_curated_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4644..5999
DNA (1356bp) protein (452aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNB8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62279.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_2368_curated_8
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6013..6537
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BCB0_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK58156.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
scnpilot_solids2_trim150_scaffold_2368_curated_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6550..7176
DNA (627bp) protein (209aa)
Nifu protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JAM0_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05006.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_2368_curated_10
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7173..7412
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B3R6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX53620.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2368_curated_11
unknown

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7450..7629
DNA (180bp) protein (60aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2368_curated_12
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7632..7952
DNA (321bp) protein (107aa)
Ferredoxin n=2 Tax=Oligotropha carboxidovorans RepID=B6JC72_OLICO
ferredoxin
Uncharacterized protein {ECO:0000313|EMBL:AEI07505.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_2368_curated_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8198..9859
DNA (1662bp) protein (554aa)
ccoN; cbb3-type cytochrome c oxidase subunit I (EC:1.9.3.1); K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1]
Cytochrome c oxidase, cbb3-type, subunit I n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7S8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG09188.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
scnpilot_solids2_trim150_scaffold_2368_curated_14
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9863..10024
DNA (162bp) protein (54aa)
Cbb3-type cytochrome c oxidase subunit II n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B838_9RHIZ
cbb3-type cytochrome c oxidase subunit II
Cbb3-type cytochrome c oxidase subunit II {ECO:0000313|EMBL:AGK56706.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Displaying 14 items

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