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scnpilot_solids2_trim150_scaffold_1682_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1682_curated_1
unknown

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3..149
DNA (147bp) protein (49aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1682_curated_2
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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146..1066
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7H303_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AID29829.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
scnpilot_solids2_trim150_scaffold_1682_curated_3
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1076..1663
DNA (588bp) protein (196aa)
acetyltransferase; K00633 galactoside O-acetyltransferase [EC:2.3.1.18]
Acetyltransferase (Isoleucine patch superfamily)-like protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V4E4_SPHWW
Acetyltransferase (Isoleucine patch superfamily)-like protein {ECO:0000313|EMBL:ABQ67160.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_solids2_trim150_scaffold_1682_curated_4
Brucella inopinata, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1677..2729)
DNA (1053bp) protein (351aa)
Ribonuclease III {ECO:0000313|EMBL:EFM56346.1}; EC=3.1.26.3 {ECO:0000313|EMBL:EFM56346.1};; TaxID=470735 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella inopinata BO1.;"
Ribonuclease III n=1 Tax=Brucella inopinata BO1 RepID=E0DP44_9RHIZ
hypothetical protein
scnpilot_solids2_trim150_scaffold_1682_curated_5
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2812..4722)
DNA (1911bp) protein (637aa)
bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; K00955 bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
Adenylylsulfate kinase {ECO:0000313|EMBL:ABG62234.1}; EC=2.7.1.25 {ECO:0000313|EMBL:ABG62234.1};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Adenylylsulfate kinase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11K41_MESSB
scnpilot_solids2_trim150_scaffold_1682_curated_6
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4722..5615)
DNA (894bp) protein (298aa)
sulfate adenylyltransferase subunit 2 (EC:2.7.7.4); K00957 sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
Sulfate adenylyltransferase {ECO:0000256|SAAS:SAAS00055732}; EC=2.7.7.4 {ECO:0000256|SAAS:SAAS00055732};; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
Sulfate adenylyltransferase, small subunit n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPY4_ACIF5
scnpilot_solids2_trim150_scaffold_1682_curated_7
unknown

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comp(5667..6338)
DNA (672bp) protein (224aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1682_curated_8
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6341..7249)
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F62F1D
Uncharacterized protein {ECO:0000313|EMBL:KJB96454.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1682_curated_9
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7299..7862)
DNA (564bp) protein (188aa)
rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase; K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JVY7_AGRVS
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:ACM36417.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
scnpilot_solids2_trim150_scaffold_1682_curated_10
Rahnella aquatilis, Rahnella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7887..8759)
DNA (873bp) protein (291aa)
glucose-1-phosphate thymidylyltransferase, short form; K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=745277 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Rahnella.;" source="Rahnella aquatilis (strain ATCC 33071 / DSM 4594 / JCM 1683 / NBRC; 105701 / NCIMB 13365 / CIP 78.65).;"
glucose-1-phosphate thymidylyltransferase n=1 Tax=Kaistia granuli RepID=UPI0003810587
scnpilot_solids2_trim150_scaffold_1682_curated_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8756..9661)
DNA (906bp) protein (302aa)
dTDP-4-dehydrorhamnose reductase; K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:ABD06274.1}; EC=1.1.1.133 {ECO:0000313|EMBL:ABD06274.1};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
dTDP-4-dehydrorhamnose reductase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IZT6_RHOP2
scnpilot_solids2_trim150_scaffold_1682_curated_12
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9662..10723)
DNA (1062bp) protein (354aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
dTDP-glucose 4,6-dehydratase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00035FC005
scnpilot_solids2_trim150_scaffold_1682_curated_13
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10940..11863)
DNA (924bp) protein (308aa)
rhamnosyltransferase; K12990 rhamnosyltransferase [EC:2.4.1.-]
Rhamnosyltransferase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7XWV4_9RHIZ
Rhamnosyltransferase {ECO:0000313|EMBL:EMS39427.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
scnpilot_solids2_trim150_scaffold_1682_curated_14
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12002..12841
DNA (840bp) protein (280aa)
serine O-acetyltransferase (EC:2.3.1.30); K00640 serine O-acetyltransferase [EC:2.3.1.30]
Serine acetyltransferase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UCA9_9RHOB
Serine acetyltransferase {ECO:0000313|EMBL:EJW10414.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
scnpilot_solids2_trim150_scaffold_1682_curated_15
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13013..13459)
DNA (447bp) protein (149aa)
Uncharacterized protein n=2 Tax=Rhizobium meliloti RepID=K0P0R1_RHIML
BadM/Rrf2 family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:AEG03136.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
scnpilot_solids2_trim150_scaffold_1682_curated_16
unknown

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comp(13555..13689)
DNA (135bp) protein (45aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1682_curated_17
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13686..14282)
DNA (597bp) protein (199aa)
PfkB domain-containing protein; K00852 ribokinase [EC:2.7.1.15]
PfkB domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYD1_STAND
PfkB domain protein {ECO:0000313|EMBL:ADH89043.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Displaying 17 items

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