ggKbase home page

scnpilot_solids2_trim150_scaffold_1521_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1521_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..721
DNA (720bp) protein (240aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phosphomethylpyrimidine synthase n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003715657
thiamine biosynthesis protein ThiC; K03147 thiamine biosynthesis protein ThiC
scnpilot_solids2_trim150_scaffold_1521_curated_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(849..1382)
DNA (534bp) protein (178aa)
TIGR02281 family clan AA aspartic protease n=1 Tax=Afipia felis ATCC 53690 RepID=K8NWZ4_AFIFE
TIGR02281 family clan AA aspartic protease {ECO:0000313|EMBL:EKS30713.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein; K06985 aspartyl protease family protein
scnpilot_solids2_trim150_scaffold_1521_curated_3
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1495..2127)
DNA (633bp) protein (211aa)
KDPG and KHG aldolase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S0Y0_9SPHN
KDPG and KHG aldolase
KDPG and KHG aldolase {ECO:0000313|EMBL:AGH49660.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
scnpilot_solids2_trim150_scaffold_1521_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2124..3047)
DNA (924bp) protein (308aa)
2-dehydro-3-deoxygalactonokinase {ECO:0000313|EMBL:KFC70924.1}; EC=2.7.1.58 {ECO:0000313|EMBL:KFC70924.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
2-oxo-3-deoxygalactonate kinase; K00883 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
2-keto-3-deoxy-galactonokinase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPB8_9RHIZ
scnpilot_solids2_trim150_scaffold_1521_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3087..3734)
DNA (648bp) protein (216aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
uracil phosphoribosyltransferase (EC:2.4.2.9); K00761 uracil phosphoribosyltransferase [EC:2.4.2.9]
uracil phosphoribosyltransferase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031CD7F0
scnpilot_solids2_trim150_scaffold_1521_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3787..4731)
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003149D6B
Uncharacterized protein {ECO:0000313|EMBL:EKS39451.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
NAD-binding 3-hydroxyacyl-CoA dehydrogenase
scnpilot_solids2_trim150_scaffold_1521_curated_7
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4983..6353
DNA (1371bp) protein (457aa)
aminotransferase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DC0E6D
Aminotransferase {ECO:0000313|EMBL:ESZ21687.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
aminotransferase
scnpilot_solids2_trim150_scaffold_1521_curated_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6378..6800)
DNA (423bp) protein (141aa)
Endoribonuclease L-PSP n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QL00_NITHX
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:ABE63097.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_1521_curated_9
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6880..8115)
DNA (1236bp) protein (412aa)
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z015_9RHIZ
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:EIM29557.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1521_curated_10
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8112..9491)
DNA (1380bp) protein (460aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase {ECO:0000313|EMBL:CCP38337.1}; EC=3.5.4.28 {ECO:0000313|EMBL:CCP38337.1};; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. translucens DSM 18974.;"
N-formimino-L-glutamate deiminase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000346B317
hutF; N-formimino-L-glutamate deiminase
scnpilot_solids2_trim150_scaffold_1521_curated_11
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9546..10328)
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TCS9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE04267.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
conserved membrane hypothetical protein
scnpilot_solids2_trim150_scaffold_1521_curated_12
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10353..11117)
DNA (765bp) protein (255aa)
HpcH/HpaI aldolase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MEQ2_9RHIZ
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase {ECO:0000313|EMBL:KGM31184.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hpcH; HpcH/HpaI aldolase
scnpilot_solids2_trim150_scaffold_1521_curated_13
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11335..12348
DNA (1014bp) protein (338aa)
Flavin dependant oxidoreductase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DQL7_BRAJP
flavin dependent oxidoreductase
Uncharacterized protein {ECO:0000313|EMBL:KGT77162.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
scnpilot_solids2_trim150_scaffold_1521_curated_14
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12577..14811
DNA (2235bp) protein (745aa)
alpha,alpha-trehalose-phosphate synthase (EC:2.4.1.15); K00697 trehalose 6-phosphate synthase [EC:2.4.1.15]
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) {ECO:0000313|EMBL:ADP70573.1}; EC=2.4.1.15 {ECO:0000313|EMBL:ADP70573.1};; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I5Y0_RHOVT
scnpilot_solids2_trim150_scaffold_1521_curated_15
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14808..15053
DNA (246bp) protein (82aa)
Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117}; EC=3.1.3.12 {ECO:0000256|RuleBase:RU361117};; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
HAD-superfamily hydrolase (EC:3.1.3.12); K01087 trehalose 6-phosphate phosphatase [EC:3.1.3.12]
HAD family hydrolase n=1 Tax=Methylobacterium sp. 77 RepID=UPI00036125BC
Displaying 15 items

View Taxonomy